Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003910A_C01 KMC003910A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id... 211 2e-57
ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id... 211 4e-56
ref|NP_199189.1| beta-ketoacyl-CoA synthase; protein id: At5g437... 213 1e-55
gb|AAK59535.1| putative beta-ketoacyl-CoA synthase [Arabidopsis ... 213 1e-55
gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis ... 208 3e-55
>ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id: At2g26640.1
[Arabidopsis thaliana] gi|25407838|pir||A84663 probable
beta-ketoacyl-CoA synthase [imported] - Arabidopsis
thaliana gi|2760830|gb|AAB95298.1| putative
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
gi|28392937|gb|AAO41904.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
gi|28973575|gb|AAO64112.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
Length = 509
Score = 211 bits (536), Expect(2) = 2e-57
Identities = 95/113 (84%), Positives = 108/113 (95%)
Frame = -1
Query: 665 KVFKVKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTSS 486
K+FK+KIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL L++WHMEPSRMTL RFGNTSS
Sbjct: 380 KLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRFGNTSS 439
Query: 485 SSLWYELAYTEAKGRIRKGDRTCQIAFGSGFKCNSAVWQALKTINPAQEKNPW 327
SSLWYELAY+EAKGRI+KGDR QIAFGSGFKCNS+VW+A++++NP +EKNPW
Sbjct: 440 SSLWYELAYSEAKGRIKKGDRIWQIAFGSGFKCNSSVWRAVRSVNPKKEKNPW 492
Score = 34.3 bits (77), Expect(2) = 2e-57
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -2
Query: 343 RRKTLGLDEIHEFPVHVPKVSAI 275
+ K +DEIHEFPV VPKVS I
Sbjct: 487 KEKNPWMDEIHEFPVEVPKVSTI 509
>ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id: At1g04220.1
[Arabidopsis thaliana] gi|7488037|pir||T00951 probable
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
F20D22.1 - Arabidopsis thaliana
gi|3142289|gb|AAC16740.1| Strong similarity to
beta-keto-Coa synthase gb|U37088 from Simmondsia
chinensis. [Arabidopsis thaliana]
Length = 528
Score = 211 bits (537), Expect(2) = 4e-56
Identities = 101/118 (85%), Positives = 111/118 (93%), Gaps = 5/118 (4%)
Frame = -1
Query: 665 KVFKVK-IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTS 489
KVF VK IKPYIPDFKLAFEHFCIHAGGRAVLDE+EKNLDLS+WHMEPSRMTLNRFGNTS
Sbjct: 387 KVFNVKKIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTS 446
Query: 488 SSSLWYELAYTEAKGRIRKGDRTCQIAFGSGFKCNSAVWQALKTINPAQEK----NPW 327
SSSLWYELAY+EAKGRI++GDRT QIAFGSGFKCNSAVW+AL+TI+P++EK NPW
Sbjct: 447 SSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPW 504
Score = 29.3 bits (64), Expect(2) = 4e-56
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 325 LDEIHEFPVHVPKVSAI 275
+DEIHEFPV VP+ S +
Sbjct: 505 IDEIHEFPVPVPRTSPV 521
>ref|NP_199189.1| beta-ketoacyl-CoA synthase; protein id: At5g43760.1, supported by
cDNA: gi_14334713, supported by cDNA: gi_15983490
[Arabidopsis thaliana] gi|10177945|dbj|BAB11304.1|
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
gi|15983491|gb|AAL11613.1|AF424620_1 AT5g43760/MQD19_11
[Arabidopsis thaliana] gi|23297625|gb|AAN12994.1|
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 529
Score = 213 bits (542), Expect(2) = 1e-55
Identities = 102/115 (88%), Positives = 110/115 (94%), Gaps = 2/115 (1%)
Frame = -1
Query: 665 KVFKVK-IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTS 489
KVFKVK IKPYIPDFKLAFEHFCIHAGGRAVLDE+EKNLDLS+WHMEPSRMTLNRFGNTS
Sbjct: 395 KVFKVKKIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTS 454
Query: 488 SSSLWYELAYTEAKGRIRKGDRTCQIAFGSGFKCNSAVWQALKTINPAQEK-NPW 327
SSSLWYELAY+EAKGRI++GDRT QIAFGSGFKCNSAVW+AL+TI+P EK NPW
Sbjct: 455 SSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWKALRTIDPMDEKTNPW 509
Score = 25.8 bits (55), Expect(2) = 1e-55
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = -2
Query: 325 LDEIHEFPVHVPKVSAI 275
+DEI +FPV VP+++ I
Sbjct: 510 IDEIDDFPVQVPRITPI 526
>gb|AAK59535.1| putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 529
Score = 213 bits (542), Expect(2) = 1e-55
Identities = 102/115 (88%), Positives = 110/115 (94%), Gaps = 2/115 (1%)
Frame = -1
Query: 665 KVFKVK-IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTS 489
KVFKVK IKPYIPDFKLAFEHFCIHAGGRAVLDE+EKNLDLS+WHMEPSRMTLNRFGNTS
Sbjct: 395 KVFKVKKIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTS 454
Query: 488 SSSLWYELAYTEAKGRIRKGDRTCQIAFGSGFKCNSAVWQALKTINPAQEK-NPW 327
SSSLWYELAY+EAKGRI++GDRT QIAFGSGFKCNSAVW+AL+TI+P EK NPW
Sbjct: 455 SSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWKALRTIDPMDEKTNPW 509
Score = 25.8 bits (55), Expect(2) = 1e-55
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = -2
Query: 325 LDEIHEFPVHVPKVSAI 275
+DEI +FPV VP+++ I
Sbjct: 510 IDEIDDFPVQVPRITPI 526
>gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 523
Score = 208 bits (530), Expect(2) = 3e-55
Identities = 100/118 (84%), Positives = 110/118 (92%), Gaps = 5/118 (4%)
Frame = -1
Query: 665 KVFKVK-IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLNRFGNTS 489
KVF VK IKPYIPDFKLAFEHFCIHAGGRAVLDE+EKNLDLS+WHMEPSRMTLNRFGNTS
Sbjct: 382 KVFNVKKIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTS 441
Query: 488 SSSLWYELAYTEAKGRIRKGDRTCQIAFGSGFKCNSAVWQALKTINPAQEK----NPW 327
SSSLWY LAY+EAKGRI++GDRT QIAFGSGFKCNSAVW+AL+TI+P++EK NPW
Sbjct: 442 SSSLWYGLAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPW 499
Score = 29.3 bits (64), Expect(2) = 3e-55
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 325 LDEIHEFPVHVPKVSAI 275
+DEIHEFPV VP+ S +
Sbjct: 500 IDEIHEFPVPVPRTSPV 516
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,752,232
Number of Sequences: 1393205
Number of extensions: 11042603
Number of successful extensions: 27286
Number of sequences better than 10.0: 601
Number of HSP's better than 10.0 without gapping: 26627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27276
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
