Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003909A_C01 KMC003909A_c01
(721 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43162.1| unknown protein [Arabidopsis thaliana] gi|289507... 200 1e-50
ref|NP_193341.1| hypothetical protein; protein id: At4g16060.1 [... 194 8e-49
ref|NP_808290.1| hypothetical protein A230042K10 [Mus musculus] ... 35 1.4
ref|NP_052597.1| ABC transporter subunit PenM [Pediococcus pento... 35 1.4
emb|CAD31740.4| chitinase [Tenebrio molitor] 34 1.8
>dbj|BAC43162.1| unknown protein [Arabidopsis thaliana] gi|28950779|gb|AAO63313.1|
At4g16060 [Arabidopsis thaliana]
Length = 228
Score = 200 bits (509), Expect = 1e-50
Identities = 91/116 (78%), Positives = 104/116 (89%)
Frame = -3
Query: 719 ETLDGKPFEFPAVLCARYSDEEFFKIRCKGDKEIYFQQYGRWNIDKIWRDDVLPCRVYLR 540
ETL+GKP+ AVLC RYSDEEFF+IRCKG+K IYFQ YGR+ IDKIWRDD+LPCR+YLR
Sbjct: 113 ETLEGKPYTNSAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDILPCRLYLR 172
Query: 539 HCVLAAKNLDDTAYNNFLDHTYLADRKTTIREYLATTGSGIMEEEPPKSVKYRYGG 372
HCVLAAKNL D AYNNFLDHT+L DRKTTIREYL++TGSGIMEEEPP+++K RY G
Sbjct: 173 HCVLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSRYRG 228
>ref|NP_193341.1| hypothetical protein; protein id: At4g16060.1 [Arabidopsis
thaliana] gi|7485175|pir||G71426 hypothetical protein -
Arabidopsis thaliana gi|2244964|emb|CAB10385.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268355|emb|CAB78648.1| hypothetical protein
[Arabidopsis thaliana]
Length = 274
Score = 194 bits (494), Expect = 8e-49
Identities = 88/109 (80%), Positives = 99/109 (90%)
Frame = -3
Query: 698 FEFPAVLCARYSDEEFFKIRCKGDKEIYFQQYGRWNIDKIWRDDVLPCRVYLRHCVLAAK 519
F F AVLC RYSDEEFF+IRCKG+K IYFQ YGR+ IDKIWRDD+LPCR+YLRHCVLAAK
Sbjct: 166 FRFLAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDILPCRLYLRHCVLAAK 225
Query: 518 NLDDTAYNNFLDHTYLADRKTTIREYLATTGSGIMEEEPPKSVKYRYGG 372
NL D AYNNFLDHT+L DRKTTIREYL++TGSGIMEEEPP+++K RYGG
Sbjct: 226 NLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSRYGG 274
>ref|NP_808290.1| hypothetical protein A230042K10 [Mus musculus]
gi|26332657|dbj|BAC30046.1| unnamed protein product [Mus
musculus]
Length = 625
Score = 34.7 bits (78), Expect = 1.4
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +2
Query: 464 GQQGKCDPESCCRLCHQDSLQPVHSV---EDKH------GKVRHHLSKFYQYSTVHIVEN 616
G+ KC E C + H SL H + E+K GK H+LS+ + T+H E
Sbjct: 246 GKPYKC--EVCGKAFHYPSLLSKHKIIHTEEKPYKCEVCGKAFHYLSRLSNHKTIHTGEK 303
Query: 617 KFPCLLYIES*KTPHHYNEHK 679
+ C + ++ P +EHK
Sbjct: 304 PYKCEVCGKAFHVPSSLSEHK 324
>ref|NP_052597.1| ABC transporter subunit PenM [Pediococcus pentosaceus]
gi|10956125|ref|NP_037577.1| putative ABC transporter
membrane-spanning subunit [Pediococcus pentosaceus]
gi|4587881|gb|AAD25907.1|AF069302_16 ABC transporter
subunit PenM [Pediococcus pentosaceus]
gi|5091683|gb|AAD39630.1|AF033858_13 putative ABC
transporter membrane-spanning subunit [Pediococcus
pentosaceus]
Length = 269
Score = 34.7 bits (78), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = -1
Query: 547 IFDTVYWLQRILMTQPTTTFWITLTLLTVKQPSASTWQQQDLA 419
IF TV+WL + + P TF+ T+ +L V Q S S+ Q +A
Sbjct: 170 IFPTVHWLIMMFIIAPLLTFFSTMLVLMVSQKSKSSKSAQSVA 212
>emb|CAD31740.4| chitinase [Tenebrio molitor]
Length = 2838
Score = 34.3 bits (77), Expect = 1.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -1
Query: 505 QPTTTFWITLTLLTVKQPSASTWQQQDLASWK----RSPLSPSSTA 380
+PTTT W T + ++P+ ++WQ+ SW+ R P P++T+
Sbjct: 1219 KPTTTSWQKPTTTSWQRPTTTSWQKPTTTSWQRPTTRPPYRPTTTS 1264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,964,761
Number of Sequences: 1393205
Number of extensions: 12123913
Number of successful extensions: 31837
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 30647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31795
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
