Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003908A_C01 KMC003908A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA18039.1| hypothetical protein [Plasmodium yoelii yoelii] 37 0.18
ref|NP_584707.1| hypothetical protein [Encephalitozoon cuniculi]... 37 0.24
ref|XP_222773.1| similar to Ral-A exchange factor RalGPS2 [Mus m... 37 0.24
gb|AAH47391.1| Similar to RIKEN cDNA 4921528G01 gene [Homo sapiens] 35 0.92
emb|CAC13168.1| dJ595C2.1.2 (KIAA0351) [Homo sapiens] 35 0.92
>gb|EAA18039.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1985
Score = 37.0 bits (84), Expect = 0.18
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +2
Query: 104 YNNSRTLRSSQVQCYEDNKTQITYNLTTTTTPRHNHQAEGETNPPSFITLHRRWLCLFSL 283
YN ++L + D+K + YN + R H + TN +F+T +
Sbjct: 1694 YNMEKSLNDKSMNETYDHKNRNNYNTSNKNMDRKVHTLKNNTNSTNFVTTN--------- 1744
Query: 284 HHHNHNHNNLTKVRFFLNK 340
+ NHN++N TK+ +N+
Sbjct: 1745 INTNHNNDNNTKINVHVNR 1763
>ref|NP_584707.1| hypothetical protein [Encephalitozoon cuniculi]
gi|19068743|emb|CAD25211.1| hypothetical protein
[Encephalitozoon cuniculi]
Length = 412
Score = 36.6 bits (83), Expect = 0.24
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Frame = +2
Query: 179 LTTTTTPRHNHQAEGETNPPSFITLHRRWLCLFSLHHHNHNHNNLTKVRFFLNKLIFLSK 358
+ ++ P H+A NP F+ L R W N+ ++ F+ +L L K
Sbjct: 105 ILSSAVPCTEHEANALMNPKGFVALGRVW-------------NSYREILFYNRELFVLDK 151
Query: 359 VG-KFQRERRKKIIILFNPASPRKQFSRESIIIPEIGANWGGADPSEAQGGC--SEVIVV 529
F+ R + L S R +S E I ++G G DP+E G +E +V
Sbjct: 152 EEVSFEEYRSRTHTHLPKNGSQRFSYSHEIIEQQQVGDKIDG-DPAEGMEGVLDTEQEIV 210
Query: 530 VGGSGG------RGRRRRMVEI 577
+ GS G+R RM+ I
Sbjct: 211 IDGSTYYIKEVIDGKRYRMISI 232
>ref|XP_222773.1| similar to Ral-A exchange factor RalGPS2 [Mus musculus] [Rattus
norvegicus]
Length = 267
Score = 36.6 bits (83), Expect = 0.24
Identities = 33/134 (24%), Positives = 58/134 (42%), Gaps = 3/134 (2%)
Frame = +2
Query: 113 SRTLRSSQVQCYEDNKTQITYNLTTTTTPRHNHQAEGETNPPSFITLHRRWLCLFSLHHH 292
SR L+ + Y + T I +T + N Q N I + C + +
Sbjct: 45 SRNLQLGDICIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPML 104
Query: 293 NHNHNNLTKVRFFLNKLIFLSKVGKFQRERRKKIIILFNP--ASPRKQFSRESIIIPEIG 466
H V+ +LN + ++ ++ KF + K+ + P ++PR SRE + P++G
Sbjct: 105 PH-------VQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGASTPRSAASREDLAGPDVG 157
Query: 467 AN-WGGADPSEAQG 505
A+ GG S A+G
Sbjct: 158 ASPQGGRKSSAAEG 171
>gb|AAH47391.1| Similar to RIKEN cDNA 4921528G01 gene [Homo sapiens]
Length = 583
Score = 34.7 bits (78), Expect = 0.92
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 311 LTKVRFFLNKLIFLSKVGKFQRERRKKIIILFNP--ASPRKQFSRESIIIPEIGAN 472
L V+ +LN + ++ ++ KF + K+ + P ++PR SRE ++ PE+GA+
Sbjct: 253 LPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGAS 308
>emb|CAC13168.1| dJ595C2.1.2 (KIAA0351) [Homo sapiens]
Length = 415
Score = 34.7 bits (78), Expect = 0.92
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 311 LTKVRFFLNKLIFLSKVGKFQRERRKKIIILFNP--ASPRKQFSRESIIIPEIGAN 472
L V+ +LN + ++ ++ KF + K+ + P ++PR SRE ++ PE+GA+
Sbjct: 154 LPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGAS 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,304,764
Number of Sequences: 1393205
Number of extensions: 11716935
Number of successful extensions: 73315
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 54712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70295
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
