Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003907A_C01 KMC003907A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568530.1| expressed protein; protein id: At5g35730.1, sup... 46 3e-04
dbj|BAB09270.1| gene_id:MXH1.10~unknown protein [Arabidopsis tha... 46 3e-04
ref|NP_671910.1| similar to putative aldehyde oxidase; protein i... 42 0.003
gb|AAL86604.1|AC114397_6 Tcc1i14-2.6 [Trypanosoma cruzi] 36 0.26
ref|NP_195948.1| putative protein; protein id: At5g03280.1, supp... 35 0.45
>ref|NP_568530.1| expressed protein; protein id: At5g35730.1, supported by cDNA:
20919., supported by cDNA: gi_17979074 [Arabidopsis
thaliana] gi|17979075|gb|AAL49805.1| unknown protein
[Arabidopsis thaliana] gi|21554193|gb|AAM63272.1|
unknown [Arabidopsis thaliana]
gi|25055013|gb|AAN71970.1| unknown protein [Arabidopsis
thaliana]
Length = 457
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/39 (58%), Positives = 30/39 (75%)
Frame = -1
Query: 493 RFQWIFFRVENEWIKMNSKSHIQLSPGDVSSDEEKLLHS 377
RFQW+FFRVENEW K+ +KSH G++S +E+KLL S
Sbjct: 417 RFQWVFFRVENEWNKI-TKSH---PMGEISLEEDKLLGS 451
>dbj|BAB09270.1| gene_id:MXH1.10~unknown protein [Arabidopsis thaliana]
Length = 286
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/39 (58%), Positives = 30/39 (75%)
Frame = -1
Query: 493 RFQWIFFRVENEWIKMNSKSHIQLSPGDVSSDEEKLLHS 377
RFQW+FFRVENEW K+ +KSH G++S +E+KLL S
Sbjct: 246 RFQWVFFRVENEWNKI-TKSH---PMGEISLEEDKLLGS 280
>ref|NP_671910.1| similar to putative aldehyde oxidase; protein id: At2g32295.1
[Arabidopsis thaliana]
Length = 424
Score = 42.4 bits (98), Expect = 0.003
Identities = 21/43 (48%), Positives = 27/43 (61%), Gaps = 6/43 (13%)
Frame = -1
Query: 493 RFQWIFFRVENEWIKMNSKSHI--QLSP----GDVSSDEEKLL 383
RFQW FFR+EN W K+N+ H Q +P D+ S+ EKLL
Sbjct: 374 RFQWAFFRIENVWYKINNPKHTAHQSNPLSLQHDIDSEHEKLL 416
>gb|AAL86604.1|AC114397_6 Tcc1i14-2.6 [Trypanosoma cruzi]
Length = 182
Score = 35.8 bits (81), Expect = 0.26
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = -3
Query: 338 WHLAVSYKVYFKNFDKGELHSILSFHWLPLIPSHIKMSFFINKRVVYSIITVLFSAIFYS 159
W L ++ YF + D L+SIL HWL ++ S I++ +F ++V Y I LF+ + S
Sbjct: 27 WRLITNF-FYFGHLD---LNSILELHWLCVVSSGIELQYFRRRKVDYCI--TLFAGM--S 78
Query: 158 VTILF 144
+ +LF
Sbjct: 79 LLLLF 83
>ref|NP_195948.1| putative protein; protein id: At5g03280.1, supported by cDNA:
gi_5231114 [Arabidopsis thaliana]
gi|11357278|pir||T48349 EIN2 protein - Arabidopsis
thaliana gi|5231113|gb|AAD41076.1|AF141202_1 EIN2
[Arabidopsis thaliana]
gi|5231115|gb|AAD41077.1|AF141203_1 EIN2 [Arabidopsis
thaliana] gi|7378608|emb|CAB83284.1| EIN2 [Arabidopsis
thaliana] gi|9757779|dbj|BAB08388.1| EIN2 [Arabidopsis
thaliana]
Length = 1294
Score = 35.0 bits (79), Expect = 0.45
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 223 NDIFICEGIRGSQ-WNDKMEWSSPLSKFLKYTLYDTAKCQSIILSLAYTFS*WNEVTSLR 399
N +F+ E + GS W + W++ + ++YT + C S+ L L W T
Sbjct: 409 NVVFVVEMVFGSSDWAGGLRWNTVMGTSIQYTTLLVSSCASLCLIL------WLAATP-- 460
Query: 400 HLKRHRERAECVIWN 444
LK RAE IWN
Sbjct: 461 -LKSASNRAEAQIWN 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,371,456
Number of Sequences: 1393205
Number of extensions: 8268100
Number of successful extensions: 18524
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18518
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
