Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003906A_C01 KMC003906A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10123.1| hypothetical protein [Cicer arietinum] 33 1.1
ref|NP_712321.1| 8-amino-7-oxononanoate synthase [Leptospira int... 32 1.4
gb|ZP_00045212.1| hypothetical protein [Magnetococcus sp. MC-1] 32 1.9
ref|NP_015270.1| large cell size mutant; Lge1p [Saccharomyces ce... 30 5.4
pir||S06920 glucose transport protein, hepatic - mouse gi|55512|... 27 6.0
>emb|CAA10123.1| hypothetical protein [Cicer arietinum]
Length = 145
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 7/29 (24%)
Frame = -2
Query: 416 DSPKKTGYVKIPAAEA-------PAKGSV 351
+SPKK GYVKIPAAE PAK SV
Sbjct: 117 ESPKKMGYVKIPAAEVAAAAPAPPAKDSV 145
>ref|NP_712321.1| 8-amino-7-oxononanoate synthase [Leptospira interrogans serovar lai
str. 56601] gi|24195855|gb|AAN49339.1|AE011385_7
8-amino-7-oxononanoate synthase [Leptospira interrogans
serovar lai str. 56601]
Length = 376
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/46 (30%), Positives = 30/46 (64%), Gaps = 1/46 (2%)
Frame = +3
Query: 204 RNSKLNKLIIKKRTLSTGQELAPVSVIIYIQFNYD-ILIINNPHKI 338
++++ K+II + S +LAP+ ++Y++ YD +LI+++ H I
Sbjct: 156 KSNRKEKIIISETVFSMDGDLAPIEDLLYLKNKYDAVLILDDAHGI 201
>gb|ZP_00045212.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 516
Score = 32.0 bits (71), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +1
Query: 256 GKSWHQFRSSSTFNLTMIFSLLTIHIKSQIPHTEPLAGASAAGIL 390
G++W Q R + TF M +++ HI + +P TE A G L
Sbjct: 360 GETWDQIRDTCTFADEMDVDMVSFHIATPLPKTEMYTRAMEMGAL 404
>ref|NP_015270.1| large cell size mutant; Lge1p [Saccharomyces cerevisiae]
gi|2132167|pir||S60935 hypothetical protein YPL055c -
yeast (Saccharomyces cerevisiae)
gi|1079687|gb|AAB68310.1| Lpe17p
Length = 332
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/62 (25%), Positives = 28/62 (44%), Gaps = 6/62 (9%)
Frame = +3
Query: 81 SYHISLVEFSIQHVEQNDQYRKSTPP------CTRAFPITY*NNTNTRNSKLNKLIIKKR 242
SYH S +S H N +R++ PP + +P+ N + + + ++ KKR
Sbjct: 185 SYHSSAYPYSSSHTYNNYHHRETPPPPPSNGYYAKGYPVHVPENRSNSDGSSSSVVKKKR 244
Query: 243 TL 248
L
Sbjct: 245 IL 246
>pir||S06920 glucose transport protein, hepatic - mouse gi|55512|emb|CAA34855.1|
liver glucose transporter (AA 1-523) [Mus musculus]
Length = 523
Score = 26.9 bits (58), Expect(2) = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 276 SVIIYIQFNYDILIINNPHKIPNSSYR 356
+V+ QF YDI +IN P ++ S YR
Sbjct: 17 AVLSSFQFGYDIGVINAPQEVIISHYR 43
Score = 21.9 bits (45), Expect(2) = 6.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 329 T*NPKFLIPNPWPEPQRRGS 388
T P + P PW E + GS
Sbjct: 69 TVTPAYTTPAPWDEEETEGS 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,936,305
Number of Sequences: 1393205
Number of extensions: 6796285
Number of successful extensions: 14748
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14739
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
