Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003905A_C01 KMC003905A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194914.1| protein phosphatase 2C (PP2C); protein id: At4g... 117 8e-26
ref|NP_180079.1| protein phosphatase 2C (PP2C); protein id: At2g... 116 1e-25
gb|AAG43835.1|AF213455_1 protein phosphatase type-2C [Zea mays] 111 3e-24
gb|EAA29607.1| hypothetical protein [Neurospora crassa] gi|28950... 87 8e-17
ref|NP_588356.1| protein phosphatase 2c homolog 2 [Schizosacchar... 85 3e-16
>ref|NP_194914.1| protein phosphatase 2C (PP2C); protein id: At4g31860.1, supported
by cDNA: gi_16209697 [Arabidopsis thaliana]
gi|7488279|pir||T06308 protein phosphatase 2C homolog
F11C18.60 - Arabidopsis thaliana
gi|4584525|emb|CAB40756.1| protein phosphatase 2C-like
protein [Arabidopsis thaliana]
gi|7270089|emb|CAB79904.1| protein phosphatase 2C-like
protein [Arabidopsis thaliana]
gi|16209698|gb|AAL14406.1| AT4g31860/F11C18_60
[Arabidopsis thaliana] gi|21360433|gb|AAM47332.1|
AT4g31860/F11C18_60 [Arabidopsis thaliana]
Length = 357
Score = 117 bits (292), Expect = 8e-26
Identities = 55/90 (61%), Positives = 71/90 (78%)
Frame = -1
Query: 459 VDRHDEDEFLVLACDGIWDCLSSQPLVDFVRQQLVLETKLSVICERVLDRCLAPSIAVGV 280
V+ D+D+FLVLACDGIWDC++SQ LVDF+ +QL ETKLSV+CE+VLDRCLAP+ + G
Sbjct: 258 VELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGE 317
Query: 279 GFDNMTMILVQFKRPSQSTALAQEQSSSNE 190
G DNMTMILV+FK P+ S + ++S E
Sbjct: 318 GCDNMTMILVRFKNPTPSETELKPEASQAE 347
>ref|NP_180079.1| protein phosphatase 2C (PP2C); protein id: At2g25070.1, supported
by cDNA: 11428., supported by cDNA: gi_15292878,
supported by cDNA: gi_18652942, supported by cDNA:
gi_20258908 [Arabidopsis thaliana]
gi|25355104|pir||H84643 probable protein phosphatase 2C
[imported] - Arabidopsis thaliana
gi|4559345|gb|AAD23006.1| putative protein phosphatase
2C [Arabidopsis thaliana] gi|15292879|gb|AAK92810.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
gi|18652943|dbj|BAB84700.1| protein phosphatase 2C
[Arabidopsis thaliana] gi|20258909|gb|AAM14148.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
Length = 355
Score = 116 bits (291), Expect = 1e-25
Identities = 52/78 (66%), Positives = 65/78 (82%)
Frame = -1
Query: 459 VDRHDEDEFLVLACDGIWDCLSSQPLVDFVRQQLVLETKLSVICERVLDRCLAPSIAVGV 280
+D D+D+FLV+ACDGIWDC+SSQ LVDF+ +QL ETKLS +CE+V+DRCLAP A G
Sbjct: 258 IDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGE 317
Query: 279 GFDNMTMILVQFKRPSQS 226
G DNMT+ILVQFK+P+ S
Sbjct: 318 GCDNMTIILVQFKKPNPS 335
>gb|AAG43835.1|AF213455_1 protein phosphatase type-2C [Zea mays]
Length = 366
Score = 111 bits (278), Expect = 3e-24
Identities = 52/76 (68%), Positives = 61/76 (79%)
Frame = -1
Query: 462 IVDRHDEDEFLVLACDGIWDCLSSQPLVDFVRQQLVLETKLSVICERVLDRCLAPSIAVG 283
IV+ D+DEF+VLACDGIWDC+SSQ LVDF+R+ + E LS +CE VLDRCLAPS G
Sbjct: 257 IVELCDDDEFIVLACDGIWDCMSSQQLVDFIREHINTEESLSAVCEGVLDRCLAPSTMGG 316
Query: 282 VGFDNMTMILVQFKRP 235
G DNMTMILVQFK+P
Sbjct: 317 EGCDNMTMILVQFKKP 332
>gb|EAA29607.1| hypothetical protein [Neurospora crassa]
gi|28950040|emb|CAD70795.1| probable protein phosphatase
2C [Neurospora crassa]
Length = 439
Score = 87.0 bits (214), Expect = 8e-17
Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = -1
Query: 456 DRHDEDEFLVLACDGIWDCLSSQPLVDFVRQQLVLETKLSVICERVLDRCLAP-SIAVGV 280
D D+DEFLVLACDGIWDC SSQ +V+FVR+ + + L ICE ++D CLA S GV
Sbjct: 224 DLADDDEFLVLACDGIWDCQSSQAVVEFVRRGIAAKQDLDKICENMMDNCLASNSETGGV 283
Query: 279 GFDNMTMILVQFKR 238
G DNMTMI+V F R
Sbjct: 284 GCDNMTMIIVGFLR 297
>ref|NP_588356.1| protein phosphatase 2c homolog 2 [Schizosaccharomyces pombe]
gi|1171963|sp|Q09172|P2C2_SCHPO Protein phosphatase 2C
homolog 2 (PP2C-2) gi|1076913|pir||S54297 protein
phosphatase 2C homolog - fission yeast
(Schizosaccharomyces pombe) gi|609656|gb|AAA67320.1|
protein phosphatase 2C (ptc2+)
gi|3618217|emb|CAA20880.1| protein phosphatase 2c
homolog 2 [Schizosaccharomyces pombe]
Length = 370
Score = 85.1 bits (209), Expect = 3e-16
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -1
Query: 444 EDEFLVLACDGIWDCLSSQPLVDFVRQQLVLETKLSVICERVLDRCLAP-SIAVGVGFDN 268
+DEFL+LACDGIWDC SSQ +V+FVR+ +V L VICE ++DRC+A S + G+G DN
Sbjct: 224 DDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDN 283
Query: 267 MTMILVQF 244
MT+ +V F
Sbjct: 284 MTICIVAF 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,936,808
Number of Sequences: 1393205
Number of extensions: 7292023
Number of successful extensions: 14408
Number of sequences better than 10.0: 291
Number of HSP's better than 10.0 without gapping: 14087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14353
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
