Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003904A_C01 KMC003904A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_769368.1| blr2728 [Bradyrhizobium japonicum] gi|27350984|... 35 0.63
gb|AAF68626.1|AF254124_1 NAC1 [Medicago truncatula] 35 0.82
ref|XP_195244.1| similar to interspersed repeat antigen, putativ... 33 2.4
ref|XP_142234.1| similar to GH09355p [Mus musculus] 33 2.4
gb|AAM34765.1|AF509865_1 nam-like protein 2 [Petunia x hybrida] 33 3.1
>ref|NP_769368.1| blr2728 [Bradyrhizobium japonicum] gi|27350984|dbj|BAC47993.1|
blr2728 [Bradyrhizobium japonicum USDA 110]
Length = 519
Score = 35.4 bits (80), Expect = 0.63
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -3
Query: 605 DSWDAAGFSSVQNVECGTNGMATTGDVSGFGD 510
+S D A SS+Q+V CGTN ATTG S FG+
Sbjct: 63 NSADGASASSIQSVACGTNSSATTGG-SAFGE 93
>gb|AAF68626.1|AF254124_1 NAC1 [Medicago truncatula]
Length = 409
Score = 35.0 bits (79), Expect = 0.82
Identities = 20/45 (44%), Positives = 24/45 (52%)
Frame = -1
Query: 628 FSRTWVTWIPGMLLVSPLSRMLSVAQMEWPLQVMFQGLVTWTSWS 494
F W TWI LL +RML++A W L+VM TW SWS
Sbjct: 373 FFEVWETWIAWDLL----ARMLTLAHTVWLLRVM----TTWISWS 409
>ref|XP_195244.1| similar to interspersed repeat antigen, putative [Plasmodium
falciparum 3D7] [Mus musculus]
Length = 920
Score = 33.5 bits (75), Expect = 2.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 461 SARTRESPDQSTPRSPSHQTLKHHL*WPFHL---CHTQHSGQRRNQQHPRNPGYP 616
SA S Q T +P H H P H HTQ+ G +N H + PG+P
Sbjct: 150 SASRSHSVPQDTLSTPGHTQHPGHTQQPGHAQQPGHTQYPGNNKNTGHTQQPGHP 204
>ref|XP_142234.1| similar to GH09355p [Mus musculus]
Length = 977
Score = 33.5 bits (75), Expect = 2.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 461 SARTRESPDQSTPRSPSHQTLKHHL*WPFHLC---HTQHSGQRRNQQHPRNPGYP 616
SA S Q T +P H H P H HTQ+ G +N H + PG+P
Sbjct: 150 SASRSHSVPQDTLSTPGHTQHPGHTQQPGHAQQPGHTQYPGNNKNTGHTQQPGHP 204
>gb|AAM34765.1|AF509865_1 nam-like protein 2 [Petunia x hybrida]
Length = 487
Score = 33.1 bits (74), Expect = 3.1
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = -3
Query: 632 DFFEDLGNLDSWDAAGFSSVQNVECGTNGMATTGDVSGFGDLDFLELIDLDSPLF 468
D F+ LG++D+W G S N+ + + D+ F+EL DL++PL+
Sbjct: 361 DIFDGLGDIDNWAGLG-QSRSNISASWGANYSFNHMIVPDDVAFMELNDLETPLY 414
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,204,575
Number of Sequences: 1393205
Number of extensions: 11114376
Number of successful extensions: 29157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29062
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
