Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003900A_C01 KMC003900A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197695.1| putative protein; protein id: At5g23040.1 [Arab... 173 2e-42
pir||T45745 hypothetical protein F24M12.180 - Arabidopsis thalia... 70 3e-11
ref|NP_566946.1| putative protein; protein id: At3g51140.1, supp... 70 3e-11
ref|NP_440462.1| unknown protein [Synechocystis sp. PCC 6803] gi... 39 0.058
prf||1803562C pol protein 37 0.22
>ref|NP_197695.1| putative protein; protein id: At5g23040.1 [Arabidopsis thaliana]
gi|9759362|dbj|BAB09821.1|
emb|CAB62636.1~gene_id:MYJ24.3~similar to unknown
protein [Arabidopsis thaliana]
gi|21928168|gb|AAM78111.1| AT5g23040/MYJ24_3
[Arabidopsis thaliana] gi|23505829|gb|AAN28774.1|
At5g23040/MYJ24_3 [Arabidopsis thaliana]
Length = 258
Score = 173 bits (438), Expect = 2e-42
Identities = 81/107 (75%), Positives = 93/107 (86%)
Frame = -2
Query: 634 PPTEIILRRLFLFAFMGAWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLSRAFIIGFG 455
PP + I RRLFLFAFMG WSIMNSAE GPAFQVA+SLAAC+YFLNEKTKSL RA +IG G
Sbjct: 152 PPMDTIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIG 211
Query: 454 ALVAGWVGGSVLVPSIPSMLLRPEWTLELLTSLVVYVFLFIACTFLK 314
ALVAGW GS+++P IP+ L++P WTLELLTSLV YVFLF++CTFLK
Sbjct: 212 ALVAGWFCGSLIIPMIPTFLIQPTWTLELLTSLVAYVFLFLSCTFLK 258
>pir||T45745 hypothetical protein F24M12.180 - Arabidopsis thaliana
gi|6562266|emb|CAB62636.1| putative protein [Arabidopsis
thaliana]
Length = 247
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/107 (28%), Positives = 62/107 (56%)
Frame = -2
Query: 634 PPTEIILRRLFLFAFMGAWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLSRAFIIGFG 455
PP ++++ FA +G +++ E GP QV +SL A YF++++ + F+ G G
Sbjct: 141 PPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLYGAG 200
Query: 454 ALVAGWVGGSVLVPSIPSMLLRPEWTLELLTSLVVYVFLFIACTFLK 314
A + W+ G+ L+ S+ ++ E+++SL+ YV L++A ++L+
Sbjct: 201 AFIFSWLVGTFLMVSVIPPFIKGPRGFEVMSSLLSYVLLWVASSYLR 247
>ref|NP_566946.1| putative protein; protein id: At3g51140.1, supported by cDNA:
266414., supported by cDNA: gi_14334851, supported by
cDNA: gi_17104692 [Arabidopsis thaliana]
gi|14334852|gb|AAK59604.1| unknown protein [Arabidopsis
thaliana] gi|17104693|gb|AAL34235.1| unknown protein
[Arabidopsis thaliana] gi|21554869|gb|AAM63714.1|
unknown [Arabidopsis thaliana]
Length = 278
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/107 (28%), Positives = 62/107 (56%)
Frame = -2
Query: 634 PPTEIILRRLFLFAFMGAWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLSRAFIIGFG 455
PP ++++ FA +G +++ E GP QV +SL A YF++++ + F+ G G
Sbjct: 172 PPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLYGAG 231
Query: 454 ALVAGWVGGSVLVPSIPSMLLRPEWTLELLTSLVVYVFLFIACTFLK 314
A + W+ G+ L+ S+ ++ E+++SL+ YV L++A ++L+
Sbjct: 232 AFIFSWLVGTFLMVSVIPPFIKGPRGFEVMSSLLSYVLLWVASSYLR 278
>ref|NP_440462.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470542|pir||S75228
hypothetical protein slr1918 - Synechocystis sp. (strain
PCC 6803) gi|1652218|dbj|BAA17142.1|
ORF_ID:slr1918~unknown protein [Synechocystis sp. PCC
6803]
Length = 228
Score = 38.9 bits (89), Expect = 0.058
Identities = 18/90 (20%), Positives = 46/90 (51%)
Frame = -2
Query: 583 AWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLSRAFIIGFGALVAGWVGGSVLVPSIP 404
+W + + + + + + I+FLN K + +A ++ GAL+ G + G+VL +
Sbjct: 139 SWLTQGAGGSVQSLLLVVGVFGNIFFLNRKQRKFGKALLLSLGALLVGIILGTVLGQLLL 198
Query: 403 SMLLRPEWTLELLTSLVVYVFLFIACTFLK 314
+ LE +++ + ++ L++ +F++
Sbjct: 199 GANVAIGPNLEQISATIAFIILWLISSFVR 228
>prf||1803562C pol protein
Length = 837
Score = 37.0 bits (84), Expect = 0.22
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 383 FRAQQHRWNTGY---QHRTADPSSHKSSKPNNERSRQALRLFVKEIYASR--QRDSHLKG 547
F+ Q + W Y QH+ D S+ + K N + R K I +RDSH+ G
Sbjct: 241 FKGQPYNWELQYLVKQHQVPDGST--TCKINGRAENRRRRTPAKSISRPHDPKRDSHMVG 298
Query: 548 RSSFSRIHNAPSTHEGKKKQSSE 616
+ S +R H P + G K SS+
Sbjct: 299 QISNNRSHIRPCANNGGNKHSSK 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,591,055
Number of Sequences: 1393205
Number of extensions: 11158063
Number of successful extensions: 29495
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29472
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
