Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003897A_C01 KMC003897A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B96661 unknown protein, 83181-85105 [imported] - Arabidopsi... 109 3e-23
ref|NP_176549.1| unknown protein; protein id: At1g63610.1 [Arabi... 109 3e-23
ref|NP_489216.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 35 0.54
gb|AAM60961.1| seed maturation-like protein [Arabidopsis thaliana] 34 1.6
ref|NP_197001.1| seed maturation -like protein; protein id: At5g... 34 1.6
>pir||B96661 unknown protein, 83181-85105 [imported] - Arabidopsis thaliana
gi|12324944|gb|AAG52423.1|AC011622_11 unknown protein;
83181-85105 [Arabidopsis thaliana]
Length = 340
Score = 109 bits (272), Expect = 3e-23
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = -3
Query: 589 AVADPSQMKTSVTETSATELSKLLYWLMVVGYSIRNIEVRYDMERVLGTPPKLAELPPGE 410
AV+DP+QMKT+VTETSA +L+KLLYWLMVVGYSIRNIEVR+DMERVLGT PKLAELPPGE
Sbjct: 279 AVSDPNQMKTNVTETSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLGTQPKLAELPPGE 338
>ref|NP_176549.1| unknown protein; protein id: At1g63610.1 [Arabidopsis thaliana]
Length = 334
Score = 109 bits (272), Expect = 3e-23
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = -3
Query: 589 AVADPSQMKTSVTETSATELSKLLYWLMVVGYSIRNIEVRYDMERVLGTPPKLAELPPGE 410
AV+DP+QMKT+VTETSA +L+KLLYWLMVVGYSIRNIEVR+DMERVLGT PKLAELPPGE
Sbjct: 273 AVSDPNQMKTNVTETSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLGTQPKLAELPPGE 332
>ref|NP_489216.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25308196|pir||AH2452
hypothetical protein all5176 [imported] - Nostoc sp.
(strain PCC 7120) gi|17134314|dbj|BAB76875.1|
ORF_ID:all5176~hypothetical protein [Nostoc sp. PCC
7120]
Length = 135
Score = 35.4 bits (80), Expect = 0.54
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = -3
Query: 571 QMKTSVTETSATELSKLLYWLMVVGYSIRNIEVRYDMER 455
Q T++T TS ELS+LL MV GY +RN+E R ++E+
Sbjct: 66 QFNTNIT-TSREELSQLLGAAMVDGYFLRNVEQRLELEK 103
>gb|AAM60961.1| seed maturation-like protein [Arabidopsis thaliana]
Length = 355
Score = 33.9 bits (76), Expect = 1.6
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 550 ETSATELSKLLYWLMVVGYSIRNIEVRYDMERVLG 446
+TS L+KLL+W M++G+ +R +E R + V+G
Sbjct: 319 DTSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVG 353
>ref|NP_197001.1| seed maturation -like protein; protein id: At5g14970.1, supported
by cDNA: 106301. [Arabidopsis thaliana]
gi|11346180|pir||T51442 seed maturation-like protein -
Arabidopsis thaliana gi|9755664|emb|CAC01816.1| seed
maturation-like protein [Arabidopsis thaliana]
gi|22655278|gb|AAM98229.1| seed maturation-like protein
[Arabidopsis thaliana]
Length = 355
Score = 33.9 bits (76), Expect = 1.6
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 550 ETSATELSKLLYWLMVVGYSIRNIEVRYDMERVLG 446
+TS L+KLL+W M++G+ +R +E R + V+G
Sbjct: 319 DTSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVG 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,093,620
Number of Sequences: 1393205
Number of extensions: 10106126
Number of successful extensions: 23270
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23267
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
