Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003895A_C02 KMC003895A_c02
(794 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH33000.1| hypothetical protein FLJ10890 [Homo sapiens] 33 3.7
dbj|BAA91747.1| unnamed protein product [Homo sapiens] 33 3.7
ref|NP_252014.1| probable short-chain dehydrogenase [Pseudomonas... 33 4.8
gb|AAK21902.1|AF335329_1 alpha-aminoadipyl-cysteinyl-valine synt... 33 6.3
>gb|AAH33000.1| hypothetical protein FLJ10890 [Homo sapiens]
Length = 956
Score = 33.5 bits (75), Expect = 3.7
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Frame = +1
Query: 364 ISLIALSVHWRLHLTDSPLLPESN*LGAPRPLPPLTATGFYQGSPKPFSQIISSLIHSLK 543
++L L +H+ LHL + LL ++ + + PL L+ Y + K S + + +LK
Sbjct: 659 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNISGALEAFRQALK 717
Query: 544 IIFKCSS-----------KLYKITFSISTFQCSSKLFKFTISISHNFQ 654
+ KC + Y ++I++ CS + T+ SH+ Q
Sbjct: 718 LTTKCPECENSLKLIRCMQFYPFLYNITSSVCSGNCHEKTLDNSHDKQ 765
>dbj|BAA91747.1| unnamed protein product [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 3.7
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Frame = +1
Query: 364 ISLIALSVHWRLHLTDSPLLPESN*LGAPRPLPPLTATGFYQGSPKPFSQIISSLIHSLK 543
++L L +H+ LHL + LL ++ + + PL L+ Y + K S + + +LK
Sbjct: 410 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNISGALEAFRQALK 468
Query: 544 IIFKCSS-----------KLYKITFSISTFQCSSKLFKFTISISHNFQ 654
+ KC + Y ++I++ CS + T+ SH+ Q
Sbjct: 469 LTTKCPECENSLKLIRCMQFYPFLYNITSSVCSGNCHEKTLDNSHDKQ 516
>ref|NP_252014.1| probable short-chain dehydrogenase [Pseudomonas aeruginosa PA01]
gi|11351860|pir||B83231 probable short-chain
dehydrogenase PA3324 [imported] - Pseudomonas aeruginosa
(strain PAO1) gi|9949454|gb|AAG06712.1|AE004754_8
probable short-chain dehydrogenase [Pseudomonas
aeruginosa PAO1]
Length = 592
Score = 33.1 bits (74), Expect = 4.8
Identities = 25/97 (25%), Positives = 42/97 (42%), Gaps = 6/97 (6%)
Frame = +1
Query: 460 PPLTATGFY------QGSPKPFSQIISSLIHSLKIIFKCSSKLYKITFSISTFQCSSKLF 621
P L GF+ Q SPK + L+HS I F + + ++ +S + +
Sbjct: 141 PCLDHVGFWMREHLRQRSPKALKAVFGQLLHSWYIAFFHTPVVPELLWSAGLARLWPQFL 200
Query: 622 KFTISISHNFQINPMSFSSHTNS*NMLKISFIKSAFR 732
K + H Q+NP S + + + +FI+S FR
Sbjct: 201 KHAEGVRHP-QVNPTQASDGRHGVKLYRGNFIRSLFR 236
>gb|AAK21902.1|AF335329_1 alpha-aminoadipyl-cysteinyl-valine synthetase [Kallichroma tethys]
Length = 3734
Score = 32.7 bits (73), Expect = 6.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 188 LADSPFLSQVTSCHRGKLHLVDSPFLLRIILPKRRLHLTDSPLHPKS-CHISSIS 349
+AD P+L ++ S G L L+ S LR L SP+HP S CH S ++
Sbjct: 1500 IADGPYLERLESIMEGSLPLIPSDEALR---------LPPSPVHPNSNCHSSDLA 1545
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,623,950
Number of Sequences: 1393205
Number of extensions: 14828641
Number of successful extensions: 31060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31049
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
