Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003892A_C01 KMC003892A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175829.1| eukaryotic translation initiation factor 4A-2 (... 201 4e-51
sp|P41382|IF4U_TOBAC Eukaryotic initiation factor 4A-10 (eIF-4A-... 201 4e-51
gb|AAF19805.1| EIF4A protein [Brassica oleracea] 201 7e-51
sp|P41381|IF48_TOBAC Eukaryotic initiation factor 4A-8 (eIF-4A-8... 200 9e-51
pir||S52020 translation initiation factor eIF-4A.15 - common tob... 200 9e-51
>ref|NP_175829.1| eukaryotic translation initiation factor 4A-2 (eIF4A-2); protein
id: At1g54270.1, supported by cDNA: 3997., supported by
cDNA: gi_14423371, supported by cDNA: gi_16226680
[Arabidopsis thaliana] gi|1170505|sp|P41377|IF42_ARATH
Eukaryotic initiation factor 4A-2 (eIF-4A-2) (eIF4A-2)
gi|322504|pir||JC1453 translation initiation factor
eIF-4A2 - Arabidopsis thaliana gi|16556|emb|CAA46189.1|
eukaryotic translation initiation factor 4A-2
[Arabidopsis thaliana]
gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic
Initiation Factor 4A-2 [Arabidopsis thaliana]
gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic
Initiation Factor 4A-2 [Arabidopsis thaliana]
gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52
[Arabidopsis thaliana] gi|21593545|gb|AAM65512.1|
eukaryotic translation initiation factor 4A, putative
[Arabidopsis thaliana]
Length = 412
Score = 201 bits (512), Expect = 4e-51
Identities = 101/105 (96%), Positives = 102/105 (96%)
Frame = -2
Query: 564 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 385
THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIG
Sbjct: 308 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIG 367
Query: 384 RSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 250
RSGRFGRKGVAINFVTLDD RML DIQKFYNV VEELPSNVADLL
Sbjct: 368 RSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
>sp|P41382|IF4U_TOBAC Eukaryotic initiation factor 4A-10 (eIF-4A-10) (eIF4A-10)
gi|1362118|pir||S55898 translation initiation factor
eIF-4A.10 - common tobacco gi|475213|emb|CAA55642.1|
translation initiation factor (eIF-4A) [Nicotiana
tabacum] gi|475216|emb|CAA55641.1| translation
initiation factor (eIF-4A) [Nicotiana tabacum]
Length = 413
Score = 201 bits (512), Expect = 4e-51
Identities = 100/105 (95%), Positives = 102/105 (96%)
Frame = -2
Query: 564 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 385
THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG
Sbjct: 309 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 368
Query: 384 RSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 250
RSGRFGRKGVAINFVT DD RMLSDIQKFYNV +EELP+NVADLL
Sbjct: 369 RSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413
>gb|AAF19805.1| EIF4A protein [Brassica oleracea]
Length = 354
Score = 201 bits (510), Expect = 7e-51
Identities = 100/105 (95%), Positives = 102/105 (96%)
Frame = -2
Query: 564 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 385
THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIG
Sbjct: 250 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIG 309
Query: 384 RSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 250
RSGRFGRKGVAINF+T DD RMLSDIQKFYNV VEELPSNVADLL
Sbjct: 310 RSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVVEELPSNVADLL 354
>sp|P41381|IF48_TOBAC Eukaryotic initiation factor 4A-8 (eIF-4A-8) (eIF4A-8)
gi|2119931|pir||S60244 translation initiation factor
eIF-4A.8, anther-specific - common tobacco
gi|475219|emb|CAA55639.1| translation initiation factor
(eIF-4A) [Nicotiana tabacum] gi|475221|emb|CAA55640.1|
translation initiation factor (eIF-4A) [Nicotiana
tabacum]
Length = 413
Score = 200 bits (509), Expect = 9e-51
Identities = 100/105 (95%), Positives = 101/105 (95%)
Frame = -2
Query: 564 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 385
THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG
Sbjct: 309 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 368
Query: 384 RSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 250
RSGRFGRKGVAINFVT DD RML DIQKFYNV +EELPSNVADLL
Sbjct: 369 RSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
>pir||S52020 translation initiation factor eIF-4A.15 - common tobacco
Length = 413
Score = 200 bits (509), Expect = 9e-51
Identities = 99/105 (94%), Positives = 102/105 (96%)
Frame = -2
Query: 564 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 385
THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG
Sbjct: 309 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 368
Query: 384 RSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 250
RSGRFGRKGVAINFVT DD RMLSDIQ+FYNV +EELP+NVADLL
Sbjct: 369 RSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPANVADLL 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,111,390
Number of Sequences: 1393205
Number of extensions: 10039884
Number of successful extensions: 29065
Number of sequences better than 10.0: 2225
Number of HSP's better than 10.0 without gapping: 27803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28868
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
