Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003890A_C01 KMC003890A_c01
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF86201.1|AF238886_1 putative VrrB [Bacillus cereus] 46 5e-04
gb|AAF86203.1|AF238888_1 putative VrrB [Bacillus cereus] 43 0.003
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 41 0.013
gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining ... 37 0.040
gb|AAF86210.1| VrrB [Bacillus anthracis] 39 0.049
>gb|AAF86201.1|AF238886_1 putative VrrB [Bacillus cereus]
Length = 296
Score = 45.8 bits (107), Expect = 5e-04
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -1
Query: 513 HQ-HHHQQGREGQRGYHLLKAKHHGHRAAQDWWQ**SHNHPYVEQFGHERES 361
HQ HHH QG +GQ G+H + +HHGH+ Q H H +Q+ +++S
Sbjct: 219 HQGHHHHQGHQGQHGHHGHQGQHHGHQGQQ-------HQHQQYQQYQQQQQS 263
Score = 33.5 bits (75), Expect = 2.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -1
Query: 513 HQHHHQQGREGQRGYHLLKAKHHGHRAAQDWWQ**SHNHPYVEQFGHERESEN 355
H HHH QG G G+H H GH+ H+H Q H + +
Sbjct: 120 HGHHHHQGHHGHHGHH----HHQGHQGHHHHQGHHGHHHHQGHQGHHHHQGHH 168
>gb|AAF86203.1|AF238888_1 putative VrrB [Bacillus cereus]
Length = 294
Score = 43.1 bits (100), Expect = 0.003
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Frame = -1
Query: 513 HQ-HHHQQGREGQRGYHLLKAKHHGHRAAQDWWQ**SH-NHPYVEQFGHERES 361
HQ HHH QG +GQ G+H + +HHGH+ Q H H +Q+ +++S
Sbjct: 209 HQGHHHHQGHQGQHGHHGHQGQHHGHQGQHHGHQGQQHQQHQQYQQYQQQQQS 261
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 513 HQHHHQQGREGQRGYHLLKAK--HHGHRAAQDWWQ**SHNHPYVEQFGHE 370
H HHH QG+ G G+H + + HHGH Q H+H + Q GH+
Sbjct: 121 HGHHHHQGQHGHHGHHHHQGQHGHHGHHHHQGQHGHHGHHH-HQGQHGHQ 169
Score = 34.7 bits (78), Expect = 1.2
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = -1
Query: 507 HHHQQGREGQRGYHLLKAK--HHGHRAAQDWWQ**SHNHPYVEQFGH 373
HHH QG+ G G+H + + HHGH Q H+H + Q GH
Sbjct: 111 HHHHQGQHGHHGHHHHQGQHGHHGHHHHQGQHGHHGHHH-HQGQHGH 156
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 41.2 bits (95), Expect = 0.013
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -3
Query: 538 TTEKKKKKAPAPPPARKRRSEGLPPSEGEAPRPPCGAGLVAVVVTQPPLRRTVRP*KRIR 359
T +++++P+PPPAR+RRS PS P PP T PP RRT P R R
Sbjct: 553 TKSSRRRRSPSPPPARRRRS----PSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRR 608
>gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining region Y protein
(Testis-determining factor) [Dictyostelium discoideum]
Length = 1461
Score = 37.4 bits (85), Expect(2) = 0.040
Identities = 16/61 (26%), Positives = 33/61 (53%)
Frame = -1
Query: 537 QQRRRRRKHQHHHQQGREGQRGYHLLKAKHHGHRAAQDWWQ**SHNHPYVEQFGHERESE 358
QQ++++++ QH QQ ++ Q+ H + +H H+ Q Q H H + Q H+ + +
Sbjct: 1031 QQQQQQQQQQHQQQQQQQQQQHQHQQQHQHQQHQHQQHQHQHQQHQHQHQHQHQHQHQHQ 1090
Query: 357 N 355
+
Sbjct: 1091 H 1091
Score = 32.0 bits (71), Expect = 7.8
Identities = 15/62 (24%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = -1
Query: 537 QQRRRRRKHQHHHQQGREGQRGYHLL-KAKHHGHRAAQDWWQ**SHNHPYVEQFGHERES 361
QQ++++++ QH HQQ + Q+ H + +H H+ H H + Q H+ +
Sbjct: 1042 QQQQQQQQQQHQHQQQHQHQQHQHQQHQHQHQQHQHQHQHQHQHQHQHQHQHQHQHQHQH 1101
Query: 360 EN 355
++
Sbjct: 1102 QH 1103
Score = 21.2 bits (43), Expect(2) = 0.040
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 658 QHHFHQTKQQ 629
QHH HQ +QQ
Sbjct: 1010 QHHHHQQQQQ 1019
>gb|AAF86210.1| VrrB [Bacillus anthracis]
Length = 121
Score = 39.3 bits (90), Expect = 0.049
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 4/52 (7%)
Frame = -1
Query: 513 HQHHHQQGREGQRGYHLLKAKHHGHRAAQDWWQ**SHNHP----YVEQFGHE 370
H HHH QG G G+H + HHGH H HP Y GH+
Sbjct: 39 HGHHHHQGHHGHHGHHQQQVHHHGHH----------HIHPQAILYQTHQGHQ 80
Score = 34.7 bits (78), Expect = 1.2
Identities = 18/52 (34%), Positives = 21/52 (39%), Gaps = 5/52 (9%)
Frame = -1
Query: 513 HQHHHQQGREGQRG-----YHLLKAKHHGHRAAQDWWQ**SHNHPYVEQFGH 373
H HHH QG +G G +H HHGH Q H+ V GH
Sbjct: 12 HGHHHHQGHQGHHGHQGHHHHQGHHGHHGHHHHQGHHGHHGHHQQQVHHHGH 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,064,878
Number of Sequences: 1393205
Number of extensions: 15817485
Number of successful extensions: 86094
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 66769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83041
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
