Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003888A_C01 KMC003888A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180001.1| unknown protein; protein id: At2g24240.1 [Arabi... 209 1e-53
ref|NP_194823.1| putative protein; protein id: At4g30940.1, supp... 207 4e-53
emb|CAC09496.1| hypothetical protein [Oryza sativa (indica culti... 184 4e-46
emb|CAD41491.1| OSJNBa0029H02.7 [Oryza sativa (japonica cultivar... 184 4e-46
ref|XP_208585.1| hypothetical protein XP_208585 [Homo sapiens] 35 0.32
>ref|NP_180001.1| unknown protein; protein id: At2g24240.1 [Arabidopsis thaliana]
gi|25412200|pir||C84634 hypothetical protein At2g24240
[imported] - Arabidopsis thaliana
gi|4115384|gb|AAD03385.1| unknown protein [Arabidopsis
thaliana]
Length = 441
Score = 209 bits (532), Expect = 1e-53
Identities = 100/116 (86%), Positives = 106/116 (91%)
Frame = -2
Query: 477 NNSICVVNEFEDLGFMDLRSSAAASVRWSSRSRLMKGKMPEEPCYPKLALHGGQLFSSMN 298
+NSICVVNEFEDLGF+DLR SVRWSSRS+LMK KMP+EPCYPKLALH GQLFSSMN
Sbjct: 327 SNSICVVNEFEDLGFIDLRMYGG-SVRWSSRSKLMKSKMPDEPCYPKLALHEGQLFSSMN 385
Query: 297 DCISVFCGPEWVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDIWETPTPPII 130
D ISVFCGP+WVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFD+WETP PII
Sbjct: 386 DSISVFCGPDWVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDVWETPPCPII 441
>ref|NP_194823.1| putative protein; protein id: At4g30940.1, supported by cDNA:
gi_16226414 [Arabidopsis thaliana]
gi|25407697|pir||C85362 hypothetical protein AT4g30940
[imported] - Arabidopsis thaliana
gi|2980772|emb|CAA18199.1| putative protein [Arabidopsis
thaliana] gi|7269996|emb|CAB79812.1| putative protein
[Arabidopsis thaliana]
gi|16226415|gb|AAL16162.1|AF428394_1 AT4g30940/F6I18_150
[Arabidopsis thaliana] gi|22137122|gb|AAM91406.1|
At4g30940/F6I18_150 [Arabidopsis thaliana]
Length = 441
Score = 207 bits (528), Expect = 4e-53
Identities = 99/117 (84%), Positives = 106/117 (89%), Gaps = 1/117 (0%)
Frame = -2
Query: 477 NNSICVVNEFEDLGFMDLR-SSAAASVRWSSRSRLMKGKMPEEPCYPKLALHGGQLFSSM 301
+NSICVVNEFEDLGF+DLR +SVRWSSRSRLMK KMP+EPCYPKLALH GQLFSSM
Sbjct: 325 SNSICVVNEFEDLGFIDLRMDGGGSSVRWSSRSRLMKSKMPDEPCYPKLALHEGQLFSSM 384
Query: 300 NDCISVFCGPEWVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDIWETPTPPII 130
ND ISVFCG +WVLTSRL+RSYGGSICDFSIGGDRLFALHSEENVFD+WET PPII
Sbjct: 385 NDSISVFCGSDWVLTSRLKRSYGGSICDFSIGGDRLFALHSEENVFDVWETLPPPII 441
>emb|CAC09496.1| hypothetical protein [Oryza sativa (indica cultivar-group)]
Length = 451
Score = 184 bits (467), Expect = 4e-46
Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Frame = -2
Query: 471 SICVVNEFEDLGFMDLRSSAAASVRWSSRSRLMKGKMP-EEPCYPKLALHGGQLFSSMND 295
S+CV+N+++DLGF+DLRS+A VRWSSRS+ M K+P EE CYPKLA HGGQLFSSMND
Sbjct: 338 SVCVINQYDDLGFLDLRSNAGG-VRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMND 396
Query: 294 CISVFCGPEWVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDIWETPTPPII 130
ISVF GPE VLTS LRRS+GG+ICDFSIGGDRLFALH+EENVFD+WETP PPII
Sbjct: 397 SISVFSGPECVLTSTLRRSHGGAICDFSIGGDRLFALHNEENVFDVWETPPPPII 451
>emb|CAD41491.1| OSJNBa0029H02.7 [Oryza sativa (japonica cultivar-group)]
Length = 454
Score = 184 bits (467), Expect = 4e-46
Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Frame = -2
Query: 471 SICVVNEFEDLGFMDLRSSAAASVRWSSRSRLMKGKMP-EEPCYPKLALHGGQLFSSMND 295
S+CV+N+++DLGF+DLRS+A VRWSSRS+ M K+P EE CYPKLA HGGQLFSSMND
Sbjct: 341 SVCVINQYDDLGFLDLRSNAGG-VRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMND 399
Query: 294 CISVFCGPEWVLTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDIWETPTPPII 130
ISVF GPE VLTS LRRS+GG+ICDFSIGGDRLFALH+EENVFD+WETP PPII
Sbjct: 400 SISVFSGPECVLTSTLRRSHGGAICDFSIGGDRLFALHNEENVFDVWETPPPPII 454
>ref|XP_208585.1| hypothetical protein XP_208585 [Homo sapiens]
Length = 260
Score = 35.4 bits (80), Expect = 0.32
Identities = 28/118 (23%), Positives = 48/118 (39%), Gaps = 12/118 (10%)
Frame = +3
Query: 159 YQTHSPHYEARKAYPLQWKSHISNHHSSAGAWTSKPTQGHRTQKCNHSWRRKVVLHAKPI 338
++ HSP + +++ W H S+ S P HR+ HSW R
Sbjct: 83 HKNHSPPWNPHRSHSPPWSPHRSH---------SPPWSPHRS----HSWCRN-------- 121
Query: 339 *GNMVPQASSPSST-----------YSWSST*RSRRPS-FSNP*TPSPQTHSPHKWSY 476
+ P+++ S+ +SWS + S+ S +P Q+H+PH WS+
Sbjct: 122 --RLAPRSTRACSSRQAHNIWSHIPHSWSCSPHSQSHSPHGRSHSPHSQSHNPHSWSH 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,177,789
Number of Sequences: 1393205
Number of extensions: 10465324
Number of successful extensions: 29626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29595
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
