Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003887A_C01 KMC003887A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568225.1| Expressed protein; protein id: At5g09995.1, sup... 41 0.013
gb|AAM62717.1| unknown [Arabidopsis thaliana] 41 0.013
prf||1209265AE chorion protein B2 33 2.7
prf||1209265W chorion protein B9 33 2.7
gb|AAK61265.1|AE006465_11 unknown [Homo sapiens] 27 3.2
>ref|NP_568225.1| Expressed protein; protein id: At5g09995.1, supported by cDNA:
154063. [Arabidopsis thaliana]
gi|26453006|dbj|BAC43579.1| unknown protein [Arabidopsis
thaliana] gi|28973017|gb|AAO63833.1| unknown protein
[Arabidopsis thaliana]
Length = 205
Score = 40.8 bits (94), Expect = 0.013
Identities = 19/29 (65%), Positives = 23/29 (78%)
Frame = -1
Query: 590 QEITHGVRSSTRAVRLAEQRLRRFTTVPP 504
Q IT GV+SSTRA+R+AE RLRR T + P
Sbjct: 168 QGITQGVKSSTRAIRVAEDRLRRLTNMNP 196
>gb|AAM62717.1| unknown [Arabidopsis thaliana]
Length = 205
Score = 40.8 bits (94), Expect = 0.013
Identities = 19/29 (65%), Positives = 23/29 (78%)
Frame = -1
Query: 590 QEITHGVRSSTRAVRLAEQRLRRFTTVPP 504
Q IT GV+SSTRA+R+AE RLRR T + P
Sbjct: 168 QGITQGVKSSTRAIRVAEDRLRRLTNMNP 196
>prf||1209265AE chorion protein B2
Length = 158
Score = 33.1 bits (74), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -1
Query: 461 GCTCGSQSCKGCERGHCQGSCYLANVFHPRPIFQVCSQ 348
GC CG C GC G C+ C +N P + +CS+
Sbjct: 30 GCGCGCGGCGGCGSGCCERFCVCSNSAAPTGL-SICSE 66
>prf||1209265W chorion protein B9
Length = 174
Score = 33.1 bits (74), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -1
Query: 461 GCTCGSQSCKGCERGHCQGSCYLANVFHPRPIFQVCSQ 348
GC CG C GC G C+ C +N P + +CS+
Sbjct: 30 GCGCGCGGCGGCGSGCCERFCVCSNSAAPTGL-SICSE 66
>gb|AAK61265.1|AE006465_11 unknown [Homo sapiens]
Length = 436
Score = 26.9 bits (58), Expect(2) = 3.2
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +1
Query: 406 P*QCPLSHPLQLWLPQVHPGQPQSFGCSFPE----EGGGTVVNRRSLCSAKRTARVELLT 573
P P S PL W+ H G +FG S P +GG V+ +A T R
Sbjct: 193 PGPAPPSPPLAGWMRNRHGGSGPAFGSSVPTGAQGQGGARTVSVEGRPAALWTQR----R 248
Query: 574 PW 579
PW
Sbjct: 249 PW 250
Score = 24.6 bits (52), Expect(2) = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +2
Query: 317 PLALSTSSDI-VESKLGISGEGEKHLQDSTTLDNALSHTP 433
P + SD+ ++S+ G + G H+Q +TL A +H P
Sbjct: 118 PAPQAPPSDLGLQSRAGHTRSGSVHVQAPSTLGTARTHGP 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,619,876
Number of Sequences: 1393205
Number of extensions: 11917101
Number of successful extensions: 44239
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 37037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41937
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
