Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003885A_C01 KMC003885A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK26020.1|AF360310_1 unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_199052.1| putative protein; protein id: At5g42370.1, supp... 50 2e-05
gb|AAF14101.1| cytochrome oxidase I [Lasioglossum apristum] 33 1.8
gb|AAF14113.1| cytochrome oxidase I [Lasioglossum nigripes] 32 3.0
gb|AAF14106.1| cytochrome oxidase I [Lasioglossum duplex] 32 3.0
>gb|AAK26020.1|AF360310_1 unknown protein [Arabidopsis thaliana]
Length = 447
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = -2
Query: 290 LDTR*NTDPVRSDGTILGNHSGYGWTVGEREMKGPPTAITTIGSSIQVL 144
LDTR + DP+RSDG+ILG+ W E E+ GP + IT IGSS+QV+
Sbjct: 180 LDTRYHRDPLRSDGSILGDTQ---WDWLENELSGPRSEITIIGSSVQVI 225
>ref|NP_199052.1| putative protein; protein id: At5g42370.1, supported by cDNA:
gi_13430795 [Arabidopsis thaliana]
gi|9759473|dbj|BAB10478.1| gene_id:MDH9.6~similar to
unknown protein~sp|P42251 [Arabidopsis thaliana]
gi|23296303|gb|AAN13036.1| unknown protein [Arabidopsis
thaliana]
Length = 447
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = -2
Query: 290 LDTR*NTDPVRSDGTILGNHSGYGWTVGEREMKGPPTAITTIGSSIQVL 144
LDTR + DP+RSDG+ILG+ W E E+ GP + IT IGSS+QV+
Sbjct: 180 LDTRYHRDPLRSDGSILGDTQ---WDWLENELSGPRSEITIIGSSVQVI 225
>gb|AAF14101.1| cytochrome oxidase I [Lasioglossum apristum]
Length = 413
Score = 33.1 bits (74), Expect = 1.8
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +3
Query: 171 GNGCGWTLHLSLSNSPTITTVISQNCSITSYRVCVLSGI 287
G+G GWT++ LSNS T IS +C+I S + +S I
Sbjct: 26 GSGTGWTIYPPLSNS-TFHPSISMDCTIFSLHIAGISSI 63
>gb|AAF14113.1| cytochrome oxidase I [Lasioglossum nigripes]
Length = 413
Score = 32.3 bits (72), Expect = 3.0
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +3
Query: 171 GNGCGWTLHLSLSNSPTITTVISQNCSITSYRVCVLSGI 287
G+G GWT++ LSNS T IS +C+I S + +S I
Sbjct: 26 GSGTGWTIYPPLSNS-TFHPSISVDCTIFSLHIAGISSI 63
>gb|AAF14106.1| cytochrome oxidase I [Lasioglossum duplex]
Length = 413
Score = 32.3 bits (72), Expect = 3.0
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +3
Query: 171 GNGCGWTLHLSLSNSPTITTVISQNCSITSYRVCVLSGI 287
G+G GWT++ LSNS T IS +C+I S + +S I
Sbjct: 26 GSGTGWTIYPPLSNS-TFHPSISVDCTIFSLHIAGISSI 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,205,602
Number of Sequences: 1393205
Number of extensions: 9305890
Number of successful extensions: 21497
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21494
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
