KMC003884A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003884A_C01 KMC003884A_c01
gccccctcgagttttttctttgttgtaGATCATACTGCTGAAGATAACATTTAAATTCTA
TCACCTGTCATGTACTTGAGTAATACAACAAAATAGGTCACTAAAGAATACAAAATTAGC
ATTAGACAATTACATGAAAACAAATGAGGAAAAATAAAGATATTACATTTATAAATAAAA
CAAGGTGATTCAAGAAATGATTGGAACAGAACTAGTAATGTTGCCAGTCCTACATTCACA
AGTGCACAGATTTCGAGATCCTTCCACCACTCGTTGAGATCTTCGGGAATGAAGTTTGAT
GTTCACCACCTTGCCAGCCATCATTTTCCAGACCAAGTCTTCAGGACCCAAGGGTTGAGC
TGGATTGGAAAACACGAAATGCCTCGAGTACTGGGCAAGATTTGGTTGCAATTCTTTTAT
CTGAGCAGGTCTAACATCTTTTAAAAATTTCAAAAGCCAGCCTGGCTTCAGAGCATCAAT
GGAAGAAACAAACAAGGCTATCTTCCTGTAATCAAGTATTCCTTCAAATGGAAGCTCCAG
CTCATCACTTACTATAGCTGGAATGCACCACTAACAATAGCATCATATAATCTAGCAGAG
GATGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003884A_C01 KMC003884A_c01
         (605 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197191.1| Exostosin family; protein id: At5g16890.1 [Arab...   182  7e-47
dbj|BAB85236.1| P0425G02.11 [Oryza sativa (japonica cultivar-gro...   129  3e-31
ref|NP_181055.2| Exostosin family; protein id: At2g35100.1 [Arab...    91  9e-18
dbj|BAC55656.1| OJ1092_A07.9 [Oryza sativa (japonica cultivar-gr...    85  4e-16
ref|NP_199306.1| Exostosin family; protein id: At5g44930.1, supp...    84  2e-15

>ref|NP_197191.1| Exostosin family; protein id: At5g16890.1 [Arabidopsis thaliana]
           gi|11357737|pir||T51544 hypothetical protein F2K13_40 -
           Arabidopsis thaliana gi|9755690|emb|CAC01702.1| putative
           protein [Arabidopsis thaliana]
           gi|15810401|gb|AAL07088.1| unknown protein [Arabidopsis
           thaliana] gi|23296585|gb|AAN13125.1| unknown protein
           [Arabidopsis thaliana]
          Length = 511

 Score =  182 bits (461), Expect(2) = 7e-47
 Identities = 82/120 (68%), Positives = 103/120 (85%)
 Frame = -3

Query: 567 CIPAIVSDELELPFEGILDYRKIALFVSSIDALKPGWLLKFLKDVRPAQIKELQPNLAQY 388
           CIP IVSDELE PFEGILDY+K+A+ VSS DA++PGWL+  L+ + P Q+K LQ NLAQY
Sbjct: 384 CIPVIVSDELEFPFEGILDYKKVAVLVSSSDAIQPGWLVNHLRSLTPFQVKGLQNNLAQY 443

Query: 387 SRHFVFSNPAQPLGPEDLVWKMMAGKVVNIKLHSRRSQRVVEGSRNLCTCECRTGNITSS 208
           SRHF++S+PAQPLGPEDL W+M+AGK+VNIKLH+RRSQRVV+GSR++C C+C   N T+S
Sbjct: 444 SRHFLYSSPAQPLGPEDLTWRMIAGKLVNIKLHTRRSQRVVKGSRSICRCDCWRSNSTAS 503

 Score = 27.3 bits (59), Expect(2) = 7e-47
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = -1

Query: 605 PSSARLYDAIVSG 567
           PSSARL+DAIVSG
Sbjct: 371 PSSARLFDAIVSG 383

>dbj|BAB85236.1| P0425G02.11 [Oryza sativa (japonica cultivar-group)]
           gi|20160709|dbj|BAB89652.1| P0468B07.31 [Oryza sativa
           (japonica cultivar-group)]
          Length = 480

 Score =  129 bits (325), Expect(2) = 3e-31
 Identities = 57/82 (69%), Positives = 73/82 (88%)
 Frame = -3

Query: 567 CIPAIVSDELELPFEGILDYRKIALFVSSIDALKPGWLLKFLKDVRPAQIKELQPNLAQY 388
           CIP IVSDELELPFEGILDYRKIALFVSS DA++PGWL+K+L+ +   +I+++Q NL +Y
Sbjct: 379 CIPVIVSDELELPFEGILDYRKIALFVSSNDAVQPGWLVKYLRSIDAKRIRQMQSNLLKY 438

Query: 387 SRHFVFSNPAQPLGPEDLVWKM 322
           SRHF++S+PA+PLGPEDL W+M
Sbjct: 439 SRHFLYSSPARPLGPEDLTWRM 460

 Score = 27.3 bits (59), Expect(2) = 3e-31
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = -1

Query: 605 PSSARLYDAIVSG 567
           PSSARL+DAIVSG
Sbjct: 366 PSSARLFDAIVSG 378

>ref|NP_181055.2| Exostosin family; protein id: At2g35100.1 [Arabidopsis thaliana]
          Length = 447

 Score = 90.5 bits (223), Expect(2) = 9e-18
 Identities = 51/125 (40%), Positives = 78/125 (61%), Gaps = 6/125 (4%)
 Frame = -3

Query: 567 CIPAIVSDELELPFEGILDYRKIALFVSSIDALKPGWLLKFLKDVRPAQIKELQPNLAQY 388
           C+P IVSD +ELPFE ++DYRK ++FV +  AL+PG+L++ L+ ++  +I E Q  +   
Sbjct: 327 CVPLIVSDSIELPFEDVIDYRKFSIFVEANAALQPGFLVQMLRKIKTKKILEYQREMKSV 386

Query: 387 SRHFVFSNPAQPLGPEDLVWKMMAGKVVNIKLHSRRSQRVVEGSRNL----CTCEC--RT 226
            R+F + NP    G    +W+ ++ K+  IKL S R +R+V   RNL    C+C C  +T
Sbjct: 387 RRYFDYDNPN---GAVKEIWRQVSHKLPLIKLMSNRDRRLV--LRNLTEPNCSCLCTNQT 441

Query: 225 GNITS 211
           G ITS
Sbjct: 442 GLITS 446

 Score = 21.2 bits (43), Expect(2) = 9e-18
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 605 PSSARLYDAIVS 570
           PS+ RL+D+IVS
Sbjct: 314 PSACRLFDSIVS 325

>dbj|BAC55656.1| OJ1092_A07.9 [Oryza sativa (japonica cultivar-group)]
          Length = 453

 Score = 84.7 bits (208), Expect(2) = 4e-16
 Identities = 41/112 (36%), Positives = 65/112 (57%)
 Frame = -3

Query: 567 CIPAIVSDELELPFEGILDYRKIALFVSSIDALKPGWLLKFLKDVRPAQIKELQPNLAQY 388
           C+P IVSD +ELPFE ++DYR I++FV +  A++PG+L   L+ +   +I E Q  + + 
Sbjct: 334 CVPVIVSDYIELPFEDVIDYRNISIFVETSKAVQPGFLTSTLRGISSQRILEYQREIKKV 393

Query: 387 SRHFVFSNPAQPLGPEDLVWKMMAGKVVNIKLHSRRSQRVVEGSRNLCTCEC 232
             +F + +P    GP + +W  ++ K   IKL   R +R+VE   N   C C
Sbjct: 394 KHYFEYEDPN---GPVNQIWHQVSSKAPLIKLLINRDKRLVERGTNGTDCSC 442

 Score = 21.6 bits (44), Expect(2) = 4e-16
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 605 PSSARLYDAIVS 570
           PS+ RL+DA+VS
Sbjct: 321 PSACRLFDALVS 332

>ref|NP_199306.1| Exostosin family; protein id: At5g44930.1, supported by cDNA:
           gi_15081732 [Arabidopsis thaliana]
           gi|10177484|dbj|BAB10875.1|
           gb|AAC61825.1~gene_id:K21C13.11~strong similarity to
           unknown protein [Arabidopsis thaliana]
           gi|15081733|gb|AAK82521.1| AT5g44930/K21C13_11
           [Arabidopsis thaliana] gi|27363262|gb|AAO11550.1|
           At5g44930/K21C13_11 [Arabidopsis thaliana]
          Length = 443

 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 42/114 (36%), Positives = 72/114 (62%), Gaps = 2/114 (1%)
 Frame = -3

Query: 567 CIPAIVSDELELPFEGILDYRKIALFVSSIDALKPGWLLKFLKDVRPAQIKELQPNLAQY 388
           C+P IVSD +ELPFE ++DYRK ++F+    ALKPG+++K L+ V+P +I + Q  + + 
Sbjct: 323 CVPVIVSDGIELPFEDVIDYRKFSIFLRRDAALKPGFVVKKLRKVKPGKILKYQKVMKEV 382

Query: 387 SRHFVFSNPAQPLGPEDLVWKMMAGKVVNIKLHSRRSQRVV--EGSRNLCTCEC 232
            R+F +++     G  + +W+ +  K+  IKL   R +R++  +GS   C+C C
Sbjct: 383 RRYFDYTHLN---GSVNEIWRQVTKKIPLIKLMINREKRMIKRDGSDPQCSCLC 433

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,437,634
Number of Sequences: 1393205
Number of extensions: 10493662
Number of successful extensions: 28811
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 27977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28789
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPDL056f10_f AV779353 1 609
2 MPD048e09_f AV773262 5 507
3 GNf082h10 BP073454 34 544
4 MWM158e06_f AV767170 49 329




Lotus japonicus
Kazusa DNA Research Institute