Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003883A_C01 KMC003883A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97489.1| emb|CAB62332.1~gene_id:F2O15.22~strong similarit... 102 2e-33
ref|NP_568910.1| putative protein; protein id: At5g59550.1, supp... 102 2e-33
ref|NP_190246.1| putative protein; protein id: At3g46620.1, supp... 98 4e-29
gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza... 100 3e-28
gb|AAM23237.1|AC092553_3 Putative RING-H2 finger protein [Oryza ... 87 2e-20
>dbj|BAA97489.1| emb|CAB62332.1~gene_id:F2O15.22~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 512
Score = 102 bits (255), Expect(2) = 2e-33
Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Frame = +1
Query: 208 SSRRLGFRRRRRDTGSRSPFNPVIVLRGTADDGADQEGGAAA----AFELYYDDGDGTGL 375
++RR RRRR +G R FNPVIVL+G A + + E G AA AFE YYDDG G+GL
Sbjct: 182 NNRRSVIRRRR--SGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYYDDGSGSGL 239
Query: 376 RPLPPTVSEFLLGSGFDRMLEQFSQIEMN--GFGRPENPP 489
RPLP +VSE L+GSGF+R+LEQ SQIE + G GR NPP
Sbjct: 240 RPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPP 279
Score = 60.8 bits (146), Expect(2) = 2e-33
Identities = 25/45 (55%), Positives = 33/45 (72%), Gaps = 6/45 (13%)
Frame = +2
Query: 26 TQPETASYWCYSCTRFVHL------SAAGNIACPHCETGFVEEIH 142
T P TASYWCYSCTRFV + + G++ACPHC+ GF+E+I+
Sbjct: 116 TTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQIN 160
>ref|NP_568910.1| putative protein; protein id: At5g59550.1, supported by cDNA:
gi_15450686, supported by cDNA: gi_17380611 [Arabidopsis
thaliana] gi|15450687|gb|AAK96615.1| AT5g59550/f2o15_210
[Arabidopsis thaliana] gi|17380612|gb|AAL36069.1|
AT5g59550/f2o15_210 [Arabidopsis thaliana]
Length = 407
Score = 102 bits (255), Expect(2) = 2e-33
Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Frame = +1
Query: 208 SSRRLGFRRRRRDTGSRSPFNPVIVLRGTADDGADQEGGAAA----AFELYYDDGDGTGL 375
++RR RRRR +G R FNPVIVL+G A + + E G AA AFE YYDDG G+GL
Sbjct: 77 NNRRSVIRRRR--SGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYYDDGSGSGL 134
Query: 376 RPLPPTVSEFLLGSGFDRMLEQFSQIEMN--GFGRPENPP 489
RPLP +VSE L+GSGF+R+LEQ SQIE + G GR NPP
Sbjct: 135 RPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPP 174
Score = 60.8 bits (146), Expect(2) = 2e-33
Identities = 25/45 (55%), Positives = 33/45 (72%), Gaps = 6/45 (13%)
Frame = +2
Query: 26 TQPETASYWCYSCTRFVHL------SAAGNIACPHCETGFVEEIH 142
T P TASYWCYSCTRFV + + G++ACPHC+ GF+E+I+
Sbjct: 11 TTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQIN 55
>ref|NP_190246.1| putative protein; protein id: At3g46620.1, supported by cDNA:
gi_20260607 [Arabidopsis thaliana]
gi|11357352|pir||T45599 hypothetical protein F12A12.140
- Arabidopsis thaliana gi|6523065|emb|CAB62332.1|
putative protein [Arabidopsis thaliana]
gi|20260608|gb|AAM13202.1| putative protein [Arabidopsis
thaliana]
Length = 395
Score = 98.2 bits (243), Expect(2) = 4e-29
Identities = 54/96 (56%), Positives = 64/96 (66%), Gaps = 11/96 (11%)
Frame = +1
Query: 235 RRRDTGSRSPFNPVIVLRGTADDGA-----DQEGGAAA----AFELYYDDGDGTGLRPLP 387
RRR + R+ FNPVIVL G GA ++EG A A+E YYDDG G+GLRPLP
Sbjct: 95 RRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERRAYEFYYDDGSGSGLRPLP 154
Query: 388 PTVSEFLLGSGFDRMLEQFSQIEM--NGFGRPENPP 489
+VSE L+GSGF+R+LEQ SQIE NG GR NPP
Sbjct: 155 DSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPP 190
Score = 51.2 bits (121), Expect(2) = 4e-29
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 38 TASYWCYSCTRFVHL----SAAGNIACPHCETGFVEEIHPVPITESRSRVTVSA 187
T SYWCYSCTRF+ + A + CP+C GF+EEI E S TV+A
Sbjct: 28 TTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEI------EDSSNSTVAA 75
>gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza sativa]
Length = 386
Score = 100 bits (250), Expect(2) = 3e-28
Identities = 56/97 (57%), Positives = 67/97 (68%), Gaps = 7/97 (7%)
Frame = +1
Query: 220 LGFRRRRRDT-----GSRSPFNPVIVLRGT-ADDGADQEGGAAAAFELYYDDGDGTGLRP 381
L RR RR G RSPFNPVIVLR + A G D AA +FEL+YDDG G+GLRP
Sbjct: 75 LRLRRTRRAAAAAAAGDRSPFNPVIVLRRSPAAAGDDDSLAAATSFELFYDDGAGSGLRP 134
Query: 382 LPPTVSEFLLGSGFDRMLEQFSQIEMNGFGRP-ENPP 489
LP T+S+FL+GSGF+R+L+Q +QIE G R ENPP
Sbjct: 135 LPETMSDFLMGSGFERLLDQLTQIEAGGLARARENPP 171
Score = 45.4 bits (106), Expect(2) = 3e-28
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +2
Query: 41 ASYWCYSCTRFVHLSAAGN---IACPHCETGFVEEIHPVP 151
+SYWCYSC RFV A + +ACP C GF+EE+ P
Sbjct: 19 SSYWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEEMSAPP 58
>gb|AAM23237.1|AC092553_3 Putative RING-H2 finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 217
Score = 87.0 bits (214), Expect(2) = 2e-20
Identities = 45/82 (54%), Positives = 55/82 (66%), Gaps = 4/82 (4%)
Frame = +1
Query: 256 RSPFNPVIVL---RGTADDGADQEGGAAAAFELYYDDGDGTGLRPLPPTVSEFLLGSGFD 426
RSPFNPVIVL G D +FEL+YDDG G+GLRPLP T+S+FL+GS F+
Sbjct: 95 RSPFNPVIVLCRSPAAVAAGDDDSLATVTSFELFYDDGVGSGLRPLPETMSDFLMGSAFE 154
Query: 427 RMLEQFSQIEMNGFGRP-ENPP 489
R+L+Q +QIE G R ENPP
Sbjct: 155 RLLDQLTQIEAGGLSRARENPP 176
Score = 32.7 bits (73), Expect(2) = 2e-20
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 32 PETASYWCYSCTRFV----HLSAAGNIACPHCETGFVEEIHPVP 151
P ++SYWCY+C FV H +A +A P+ G +EE+ P
Sbjct: 20 PASSSYWCYNCDPFVRAAPHKDSA--VAYPNYGGGILEEMGAPP 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,545,409
Number of Sequences: 1393205
Number of extensions: 12407978
Number of successful extensions: 143975
Number of sequences better than 10.0: 1957
Number of HSP's better than 10.0 without gapping: 78399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126483
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
