Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003881A_C02 KMC003881A_c02
(1068 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010649.1| 91 kDa tau91 subunit of transcription factor II... 34 4.5
>ref|NP_010649.1| 91 kDa tau91 subunit of transcription factor IIIC (TFIIIC); Tfc6p
[Saccharomyces cerevisiae] gi|2131446|pir||S61157
hypothetical protein YDR362c - yeast (Saccharomyces
cerevisiae) gi|849183|gb|AAB64796.1| Ydr362cp
[Saccharomyces cerevisiae]
Length = 672
Score = 33.9 bits (76), Expect = 4.5
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = -2
Query: 962 KVWRL*WHRGCLMPDCGVLVICLSSTKDEAEINFPKV 852
+VW L WH GC P LV CLS E INF ++
Sbjct: 365 EVWDLKWHEGCHAPH---LVGCLSFVSQEGTINFLEI 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 902,466,104
Number of Sequences: 1393205
Number of extensions: 20251400
Number of successful extensions: 44419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44408
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 63740252037
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
