Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003879A_C01 KMC003879A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197139.1| putative protein; protein id: At5g16350.1 [Arab... 39 0.020
ref|NP_200150.1| putative protein; protein id: At5g53380.1 [Arab... 37 0.10
ref|NP_190490.1| putative protein; protein id: At3g49210.1 [Arab... 33 1.1
ref|NP_177356.1| hypothetical protein; protein id: At1g72110.1 [... 33 1.9
ref|NP_190488.1| putative protein; protein id: At3g49190.1 [Arab... 32 2.5
>ref|NP_197139.1| putative protein; protein id: At5g16350.1 [Arabidopsis thaliana]
gi|9759117|dbj|BAB09602.1|
emb|CAB66399.1~gene_id:MQK4.7~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|28393404|gb|AAO42125.1| unknown protein [Arabidopsis
thaliana]
Length = 488
Score = 39.3 bits (90), Expect = 0.020
Identities = 17/63 (26%), Positives = 34/63 (52%)
Frame = -2
Query: 467 EIMIGDNXITFLRPNNSAVPHALILNMVSYAGRADMQVQVAKDIIPNPEFLAKCFEDALL 288
EI + + ++ P++ HAL+++ SYAG + + V +IP+P + E++L
Sbjct: 411 EISFNGHPVAYISPSSYGHSHALLIHYTSYAGEMTITITVDPTVIPDPHKICDDMEESLK 470
Query: 287 ELK 279
+K
Sbjct: 471 TMK 473
>ref|NP_200150.1| putative protein; protein id: At5g53380.1 [Arabidopsis thaliana]
gi|9759185|dbj|BAB09800.1|
emb|CAB66399.1~gene_id:K19E1.18~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 483
Score = 37.0 bits (84), Expect = 0.10
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = -2
Query: 467 EIMIGDNXITFLRPNNSAVPHALILNMVSYAGRADMQVQVAKDIIPNPEFLAKCFEDALL 288
E+ + N IT++ AL+++ +SYA + + + V +IP+P + E +L
Sbjct: 413 EVSLHGNCITYIALTGYGHSQALMIHFISYANKMIITIAVDPAVIPDPHNICDEMEKSLK 472
Query: 287 ELKDRVTAK 261
+KD ++ K
Sbjct: 473 AMKDTLSGK 481
>ref|NP_190490.1| putative protein; protein id: At3g49210.1 [Arabidopsis thaliana]
gi|11281939|pir||T45826 hypothetical protein F2K15.70 -
Arabidopsis thaliana gi|6723391|emb|CAB66400.1| putative
protein [Arabidopsis thaliana]
Length = 518
Score = 33.5 bits (75), Expect = 1.1
Identities = 19/66 (28%), Positives = 33/66 (49%)
Frame = -2
Query: 467 EIMIGDNXITFLRPNNSAVPHALILNMVSYAGRADMQVQVAKDIIPNPEFLAKCFEDALL 288
EI + IT++ P+ PHAL ++ SY + + + V +I +P L +E +L
Sbjct: 444 EISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVISDPHRLLDDWEKSLQ 503
Query: 287 ELKDRV 270
+K V
Sbjct: 504 SIKAAV 509
>ref|NP_177356.1| hypothetical protein; protein id: At1g72110.1 [Arabidopsis
thaliana] gi|25349458|pir||D96744 hypothetical protein
F28P5.3 [imported] - Arabidopsis thaliana
gi|12322199|gb|AAG51135.1|AC069273_6 hypothetical
protein [Arabidopsis thaliana]
gi|28393039|gb|AAO41954.1| unknown protein [Arabidopsis
thaliana] gi|28827442|gb|AAO50565.1| unknown protein
[Arabidopsis thaliana]
Length = 479
Score = 32.7 bits (73), Expect = 1.9
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -2
Query: 467 EIMIGDNXITFLRPNNSAVPHALILNMVSYAGRADMQVQVAKDIIPNPEFLAKCFEDALL 288
EI + I ++ + VP AL + + SY + + + V D+IP+P L +AL
Sbjct: 404 EISFFGHRIAYIAASTFGVPQALNICIQSYVDKLIINIGVDVDVIPDPHHLCDLIIEALR 463
Query: 287 ELKDRVTAKI 258
+ K+
Sbjct: 464 MMNSAAPKKV 473
>ref|NP_190488.1| putative protein; protein id: At3g49190.1 [Arabidopsis thaliana]
gi|11281938|pir||T45824 hypothetical protein F2K15.50 -
Arabidopsis thaliana gi|6723389|emb|CAB66398.1| putative
protein [Arabidopsis thaliana]
gi|26450244|dbj|BAC42239.1| unknown protein [Arabidopsis
thaliana] gi|28973063|gb|AAO63856.1| unknown protein
[Arabidopsis thaliana]
Length = 522
Score = 32.3 bits (72), Expect = 2.5
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -2
Query: 467 EIMIGDNXITFLRPNNSAVPHALILNMVSYAGRADMQVQVAKDIIPNPEFLAKCFEDALL 288
E+ + IT+ + PHAL ++ SY + + + V +I +P L +E++L
Sbjct: 423 EVSFYGHPITYFASSAYGHPHALTIHCQSYMNKMTITLIVDPTVISDPHRLCDDWEESLR 482
Query: 287 ELKDRVTAK 261
+K VT +
Sbjct: 483 SIKAAVTKR 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,634,841
Number of Sequences: 1393205
Number of extensions: 7245746
Number of successful extensions: 16905
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16903
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
