KMC003878A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003878A_C01 KMC003878A_c01
aaaaacgaagaaagAATAACTAGTATATAATACAAGTGAATGTGCTAGCAACTGTCACCG
ACTTAAAATTCAAAAAGTCTTCATCGCAATTTACACGCGTTTATGTAATAATGGATCATA
TAATATAATTTTGAACAAAAATCCCAAAAAATAAAATTAAAATCCAGAAATAAATTAAGC
AAAAAATAAAAATAACACAGTGTTCACACCTCTATGGCAGCATCATGATCATCTTCTTCA
TCCAACCGTCCATTTCCAGATCTTGAATCTGACATCAACATTGCATTTCGCGTTCGAGGT
CGACGCCGTCGCAGGTTTCTTCCCTGTCGGAAGAGTGACTCTGATTCCATCACATGAGAC
TCTGATTCCAACTCGAGGAGTCTTCAATTTCCCCATGGTAGCCTTCACCTTCGTGTCGAG
CTTCACCTTCAATGGCAACCCGTTCTTGCTCTTCATGCTCGCCTTCAACTTCTTCGCAGC
GTCAGCATCCAACTCATGCCCACTGCTCGAAATCGAAGATTTCAGCAGTGTTGTGTTTTT
CTTGCCGTGATGGAAAGTGGGTATGGTTCCGTCGCCGACGTCGACGTCGCCGGAGAGTAT
GG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003878A_C01 KMC003878A_c01
         (602 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564029.1| expressed protein; protein id: At1g17620.1, sup...   135  3e-31
gb|AAG40365.1|AF325013_1 At1g17620 [Arabidopsis thaliana]             135  3e-31
gb|AAM61128.1| unknown [Arabidopsis thaliana]                          87  2e-16
ref|NP_196750.1| putative protein; protein id: At5g11890.1, supp...    87  2e-16
dbj|BAB91906.1| B1151A10.19 [Oryza sativa (japonica cultivar-gro...    67  2e-10

>ref|NP_564029.1| expressed protein; protein id: At1g17620.1, supported by cDNA:
           gi_13358204, supported by cDNA: gi_15450634, supported
           by cDNA: gi_17386165 [Arabidopsis thaliana]
           gi|8778464|gb|AAF79472.1|AC022492_16 F1L3.32
           [Arabidopsis thaliana] gi|15450635|gb|AAK96589.1|
           At1g17620/F11A6_23 [Arabidopsis thaliana]
           gi|17386166|gb|AAL38629.1|AF446896_1 At1g17620/F11A6_23
           [Arabidopsis thaliana]
          Length = 264

 Score =  135 bits (341), Expect = 3e-31
 Identities = 67/114 (58%), Positives = 83/114 (72%)
 Frame = -3

Query: 588 DVDVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTK 409
           DV +G GTI  F HGKKNTT L+S+I S   ELD  +A KLK  +K+K  + +K+ L++K
Sbjct: 150 DVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSK 209

Query: 408 VKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
           VK  MG LKTP+ GIRV+C+GI+V  PTGKK  TA+TS AKC VD RFKIWK T
Sbjct: 210 VKVKMGALKTPKSGIRVTCEGIKVVAPTGKKATTATTSAAKCKVDPRFKIWKIT 263

>gb|AAG40365.1|AF325013_1 At1g17620 [Arabidopsis thaliana]
          Length = 265

 Score =  135 bits (341), Expect = 3e-31
 Identities = 67/114 (58%), Positives = 83/114 (72%)
 Frame = -3

Query: 588 DVDVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTK 409
           DV +G GTI  F HGKKNTT L+S+I S   ELD  +A KLK  +K+K  + +K+ L++K
Sbjct: 151 DVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSK 210

Query: 408 VKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
           VK  MG LKTP+ GIRV+C+GI+V  PTGKK  TA+TS AKC VD RFKIWK T
Sbjct: 211 VKVKMGALKTPKSGIRVTCEGIKVVAPTGKKATTATTSAAKCKVDPRFKIWKIT 264

>gb|AAM61128.1| unknown [Arabidopsis thaliana]
          Length = 287

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
 Frame = -3

Query: 579 VGDGTIPTFHHGKKNTTLLKSSISSS--GHELDADAAKKLKASMKSKNGLPLKVKLDTKV 406
           +G+GT+P F     N T     I++S    ELD D AK L++ + ++  +  ++++ TKV
Sbjct: 175 LGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDL-TRARVGYEIEMRTKV 233

Query: 405 KATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
           K  MGKLK+  V I+V+C+G   T+P GK P  A++   KC  D+  K+WKW+
Sbjct: 234 KMIMGKLKSEGVEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDLSVKVWKWS 286

>ref|NP_196750.1| putative protein; protein id: At5g11890.1, supported by cDNA:
           111923. [Arabidopsis thaliana] gi|11283469|pir||T48548
           hypothetical protein F14F18.60 - Arabidopsis thaliana
           gi|7573356|emb|CAB87662.1| putative protein [Arabidopsis
           thaliana]
          Length = 287

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
 Frame = -3

Query: 579 VGDGTIPTFHHGKKNTTLLKSSISSS--GHELDADAAKKLKASMKSKNGLPLKVKLDTKV 406
           +G+GT+P F     N T     I++S    ELD D AK L++ + ++  +  ++++ TKV
Sbjct: 175 LGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDL-TRARVGYEIEMRTKV 233

Query: 405 KATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
           K  MGKLK+  V I+V+C+G   T+P GK P  A++   KC  D+  K+WKW+
Sbjct: 234 KMIMGKLKSEGVEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDLSVKVWKWS 286

>dbj|BAB91906.1| B1151A10.19 [Oryza sativa (japonica cultivar-group)]
          Length = 291

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 41/133 (30%), Positives = 64/133 (47%), Gaps = 21/133 (15%)
 Frame = -3

Query: 582 DVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTKVK 403
           DVGDGT+P F H   NTT++K   S++   +D   A      ++S+    + V++D+KV 
Sbjct: 164 DVGDGTVPGFVHPAGNTTVIKGDASAAAATVDPLVAN----GLRSRKSHAMSVEMDSKVG 219

Query: 402 ATMGKLKTPRVGIRVSCDGIRVTLPTGKKPA---------------------TASTSNAK 286
             +G+ K+ R+ +RV C G    L      A                     ++ST++AK
Sbjct: 220 FQIGRFKSKRINVRVLCAGFTAALAKNTPSAPPIVVAAAPSPVRSVVKASSSSSSTTDAK 279

Query: 285 CNVDVRFKIWKWT 247
           C   +R KIW WT
Sbjct: 280 CK--LRVKIWIWT 290

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,830,878
Number of Sequences: 1393205
Number of extensions: 11087878
Number of successful extensions: 43470
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 38935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42895
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPDL033a10_f AV778112 1 505
2 GNf082a12 BP073392 7 493
3 SPD067c10_f BP049337 26 599
4 SPD063a06_f BP048991 29 604
5 MWM182d02_f AV767531 44 386
6 MRL011e10_f BP084269 54 387
7 SPD089e11_f BP051123 57 545




Lotus japonicus
Kazusa DNA Research Institute