KMC003878A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003878A_C01 KMC003878A_c01
aaaaacgaagaaagAATAACTAGTATATAATACAAGTGAATGTGCTAGCAACTGTCACCG
ACTTAAAATTCAAAAAGTCTTCATCGCAATTTACACGCGTTTATGTAATAATGGATCATA
TAATATAATTTTGAACAAAAATCCCAAAAAATAAAATTAAAATCCAGAAATAAATTAAGC
AAAAAATAAAAATAACACAGTGTTCACACCTCTATGGCAGCATCATGATCATCTTCTTCA
TCCAACCGTCCATTTCCAGATCTTGAATCTGACATCAACATTGCATTTCGCGTTCGAGGT
CGACGCCGTCGCAGGTTTCTTCCCTGTCGGAAGAGTGACTCTGATTCCATCACATGAGAC
TCTGATTCCAACTCGAGGAGTCTTCAATTTCCCCATGGTAGCCTTCACCTTCGTGTCGAG
CTTCACCTTCAATGGCAACCCGTTCTTGCTCTTCATGCTCGCCTTCAACTTCTTCGCAGC
GTCAGCATCCAACTCATGCCCACTGCTCGAAATCGAAGATTTCAGCAGTGTTGTGTTTTT
CTTGCCGTGATGGAAAGTGGGTATGGTTCCGTCGCCGACGTCGACGTCGCCGGAGAGTAT
GG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003878A_C01 KMC003878A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564029.1| expressed protein; protein id: At1g17620.1, sup... 135 3e-31
gb|AAG40365.1|AF325013_1 At1g17620 [Arabidopsis thaliana] 135 3e-31
gb|AAM61128.1| unknown [Arabidopsis thaliana] 87 2e-16
ref|NP_196750.1| putative protein; protein id: At5g11890.1, supp... 87 2e-16
dbj|BAB91906.1| B1151A10.19 [Oryza sativa (japonica cultivar-gro... 67 2e-10
>ref|NP_564029.1| expressed protein; protein id: At1g17620.1, supported by cDNA:
gi_13358204, supported by cDNA: gi_15450634, supported
by cDNA: gi_17386165 [Arabidopsis thaliana]
gi|8778464|gb|AAF79472.1|AC022492_16 F1L3.32
[Arabidopsis thaliana] gi|15450635|gb|AAK96589.1|
At1g17620/F11A6_23 [Arabidopsis thaliana]
gi|17386166|gb|AAL38629.1|AF446896_1 At1g17620/F11A6_23
[Arabidopsis thaliana]
Length = 264
Score = 135 bits (341), Expect = 3e-31
Identities = 67/114 (58%), Positives = 83/114 (72%)
Frame = -3
Query: 588 DVDVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTK 409
DV +G GTI F HGKKNTT L+S+I S ELD +A KLK +K+K + +K+ L++K
Sbjct: 150 DVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSK 209
Query: 408 VKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
VK MG LKTP+ GIRV+C+GI+V PTGKK TA+TS AKC VD RFKIWK T
Sbjct: 210 VKVKMGALKTPKSGIRVTCEGIKVVAPTGKKATTATTSAAKCKVDPRFKIWKIT 263
>gb|AAG40365.1|AF325013_1 At1g17620 [Arabidopsis thaliana]
Length = 265
Score = 135 bits (341), Expect = 3e-31
Identities = 67/114 (58%), Positives = 83/114 (72%)
Frame = -3
Query: 588 DVDVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTK 409
DV +G GTI F HGKKNTT L+S+I S ELD +A KLK +K+K + +K+ L++K
Sbjct: 151 DVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSK 210
Query: 408 VKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
VK MG LKTP+ GIRV+C+GI+V PTGKK TA+TS AKC VD RFKIWK T
Sbjct: 211 VKVKMGALKTPKSGIRVTCEGIKVVAPTGKKATTATTSAAKCKVDPRFKIWKIT 264
>gb|AAM61128.1| unknown [Arabidopsis thaliana]
Length = 287
Score = 86.7 bits (213), Expect = 2e-16
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Frame = -3
Query: 579 VGDGTIPTFHHGKKNTTLLKSSISSS--GHELDADAAKKLKASMKSKNGLPLKVKLDTKV 406
+G+GT+P F N T I++S ELD D AK L++ + ++ + ++++ TKV
Sbjct: 175 LGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDL-TRARVGYEIEMRTKV 233
Query: 405 KATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
K MGKLK+ V I+V+C+G T+P GK P A++ KC D+ K+WKW+
Sbjct: 234 KMIMGKLKSEGVEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDLSVKVWKWS 286
>ref|NP_196750.1| putative protein; protein id: At5g11890.1, supported by cDNA:
111923. [Arabidopsis thaliana] gi|11283469|pir||T48548
hypothetical protein F14F18.60 - Arabidopsis thaliana
gi|7573356|emb|CAB87662.1| putative protein [Arabidopsis
thaliana]
Length = 287
Score = 86.7 bits (213), Expect = 2e-16
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Frame = -3
Query: 579 VGDGTIPTFHHGKKNTTLLKSSISSS--GHELDADAAKKLKASMKSKNGLPLKVKLDTKV 406
+G+GT+P F N T I++S ELD D AK L++ + ++ + ++++ TKV
Sbjct: 175 LGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDL-TRARVGYEIEMRTKV 233
Query: 405 KATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 247
K MGKLK+ V I+V+C+G T+P GK P A++ KC D+ K+WKW+
Sbjct: 234 KMIMGKLKSEGVEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDLSVKVWKWS 286
>dbj|BAB91906.1| B1151A10.19 [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 66.6 bits (161), Expect = 2e-10
Identities = 41/133 (30%), Positives = 64/133 (47%), Gaps = 21/133 (15%)
Frame = -3
Query: 582 DVGDGTIPTFHHGKKNTTLLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTKVK 403
DVGDGT+P F H NTT++K S++ +D A ++S+ + V++D+KV
Sbjct: 164 DVGDGTVPGFVHPAGNTTVIKGDASAAAATVDPLVAN----GLRSRKSHAMSVEMDSKVG 219
Query: 402 ATMGKLKTPRVGIRVSCDGIRVTLPTGKKPA---------------------TASTSNAK 286
+G+ K+ R+ +RV C G L A ++ST++AK
Sbjct: 220 FQIGRFKSKRINVRVLCAGFTAALAKNTPSAPPIVVAAAPSPVRSVVKASSSSSSTTDAK 279
Query: 285 CNVDVRFKIWKWT 247
C +R KIW WT
Sbjct: 280 CK--LRVKIWIWT 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,830,878
Number of Sequences: 1393205
Number of extensions: 11087878
Number of successful extensions: 43470
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 38935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42895
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPDL033a10_f |
AV778112 |
1 |
505 |
2 |
GNf082a12 |
BP073392 |
7 |
493 |
3 |
SPD067c10_f |
BP049337 |
26 |
599 |
4 |
SPD063a06_f |
BP048991 |
29 |
604 |
5 |
MWM182d02_f |
AV767531 |
44 |
386 |
6 |
MRL011e10_f |
BP084269 |
54 |
387 |
7 |
SPD089e11_f |
BP051123 |
57 |
545 |
|
Lotus japonicus
Kazusa DNA Research Institute