Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003877A_C01 KMC003877A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL26909.1|AF319165_1 dehydration-responsive protein RD22 [Pr... 64 8e-10
dbj|BAC22500.1| resistant specific protein-2 [Vigna radiata] 64 8e-10
gb|AAL67991.1| dehydration-induced protein RD22-like protein [Go... 62 2e-09
pir||T07844 BURP domain-containing protein - rape gi|3098571|gb|... 62 3e-09
dbj|BAA92225.1| similar to the BURP domain [Vigna unguiculata] 62 4e-09
>gb|AAL26909.1|AF319165_1 dehydration-responsive protein RD22 [Prunus persica]
Length = 349
Score = 63.9 bits (154), Expect = 8e-10
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = -1
Query: 470 ALGVCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAKPS 330
A+ VCH DTS+W P H+ F+ L ++ G PVCHF P H++WV K S
Sbjct: 302 AVAVCHTDTSEWNPKHLAFQVLKVKPGTVPVCHFLPKDHIVWVPKKS 348
>dbj|BAC22500.1| resistant specific protein-2 [Vigna radiata]
Length = 440
Score = 63.9 bits (154), Expect = 8e-10
Identities = 24/45 (53%), Positives = 32/45 (70%)
Frame = -1
Query: 470 ALGVCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAK 336
A+ +CH DTS W P H+ F+ L ++ G +PVCHFFP HL+W AK
Sbjct: 396 AIVICHKDTSQWDPDHVAFQVLKVKPGTSPVCHFFPNGHLLWYAK 440
>gb|AAL67991.1| dehydration-induced protein RD22-like protein [Gossypium hirsutum]
Length = 335
Score = 62.4 bits (150), Expect = 2e-09
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = -1
Query: 470 ALGVCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAK 336
A+ VCH DTS W P H+ F+ L +E G PVCHF P H++WV K
Sbjct: 291 AVAVCHTDTSAWNPKHLAFQVLKVEPGTIPVCHFLPRDHIVWVPK 335
>pir||T07844 BURP domain-containing protein - rape gi|3098571|gb|AAC15700.1|
BURP domain containing protein [Brassica napus]
Length = 282
Score = 62.0 bits (149), Expect = 3e-09
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = -1
Query: 461 VCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAK 336
VCH+DTS W H+ FK L IE APVCHFFP+ +++WV+K
Sbjct: 241 VCHMDTSMWNADHVAFKVLKIEPRSAPVCHFFPLDNIVWVSK 282
>dbj|BAA92225.1| similar to the BURP domain [Vigna unguiculata]
Length = 132
Score = 61.6 bits (148), Expect = 4e-09
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -1
Query: 470 ALGVCHLDTSDWTPSHIIFKQLGIEAGKAPVCHFFPIKHLMWVAK 336
A+ VCH DTS W P H+ F+ L ++ G PVCHF P H++WV K
Sbjct: 88 AVAVCHTDTSQWNPKHLAFEVLKVKPGTVPVCHFLPEDHVVWVQK 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,285,525
Number of Sequences: 1393205
Number of extensions: 10354266
Number of successful extensions: 23770
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 23256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23762
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
