Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003875A_C01 KMC003875A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O52847|BGAL_BACME BETA-GALACTOSIDASE (LACTASE) gi|7474365|pir... 32 6.9
ref|NP_604079.1| Hypothetical protein [Fusobacterium nucleatum s... 32 9.1
>sp|O52847|BGAL_BACME BETA-GALACTOSIDASE (LACTASE) gi|7474365|pir||T30574
beta-galactosidase - Bacillus megaterium
gi|2764542|emb|CAA04267.1| beta-galactosidase [Bacillus
megaterium]
Length = 1034
Score = 32.3 bits (72), Expect = 6.9
Identities = 20/66 (30%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -2
Query: 629 FSHVVELTLYTALLYDFNAQILLRDNLEANLARYSHAFLS-HQHQKNQSKYSRQFP--HT 459
F H + + +LYD NAQ +L+ L+ NL+ +S H K+ +K+S + P +T
Sbjct: 263 FEHDTQDLTFEVMLYDANAQEVLQAPLQTNLSVSDQRTVSLRTHIKSPAKWSAESPNLYT 322
Query: 458 ILSTIK 441
++ ++K
Sbjct: 323 LVLSLK 328
>ref|NP_604079.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586] gi|19714797|gb|AAL95378.1| Hypothetical protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 517
Score = 32.0 bits (71), Expect = 9.1
Identities = 19/55 (34%), Positives = 33/55 (59%), Gaps = 3/55 (5%)
Frame = -2
Query: 593 LLY---DFNAQILLRDNLEANLARYSHAFLSHQHQKNQSKYSRQFPHTILSTIKQ 438
LLY D N + L D +E ++YS L+H+ +NQ K++++F I+ +IK+
Sbjct: 56 LLYNKEDINEENYL-DFIEKFYSKYSEDTLAHKKLENQLKHTKEFTSEIIKSIKE 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,205,582
Number of Sequences: 1393205
Number of extensions: 13054334
Number of successful extensions: 25623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25620
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
