Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003874A_C01 KMC003874A_c01
(403 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565733.1| putative RAD50 DNA repair protein; protein id: ... 47 7e-11
pir||D84727 probable RAD50 DNA repair protein [imported] - Arabi... 47 7e-11
gb|AAB88538.1| putative DDB p127-associated protein [Homo sapiens] 31 3.2
gb|AAC24200.1| BRCA1-associated protein 2 [Homo sapiens] 31 3.2
ref|NP_006759.2| BRCA1 associated protein [Homo sapiens] 31 3.2
>ref|NP_565733.1| putative RAD50 DNA repair protein; protein id: At2g31970.1,
supported by cDNA: gi_7110147 [Arabidopsis thaliana]
gi|7110148|gb|AAF36810.1|AF168748_1 DNA
repair-recombination protein [Arabidopsis thaliana]
gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair
protein [Arabidopsis thaliana]
gi|22654997|gb|AAM98090.1| At2g31970/F22D22.28
[Arabidopsis thaliana] gi|29028758|gb|AAO64758.1|
At2g31970/F22D22.28 [Arabidopsis thaliana]
Length = 1316
Score = 46.6 bits (109), Expect(2) = 7e-11
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -2
Query: 255 EISKLQIEAEGHTSLKNKRDSSIPNLLARYNLG 157
EISKLQ EAE H LKN+RDS+I N+ YNLG
Sbjct: 350 EISKLQTEAEAHMLLKNERDSTIQNIFFHYNLG 382
Score = 40.0 bits (92), Expect(2) = 7e-11
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -3
Query: 395 DTDEELMNCKTKFKERIAMLQCYKISKLEREMNDTPTS 282
DT EEL K+KF+ER+A+L KI K+EREM DT T+
Sbjct: 300 DTIEELKEWKSKFEERLALLGT-KIRKMEREMVDTETT 336
>pir||D84727 probable RAD50 DNA repair protein [imported] - Arabidopsis thaliana
Length = 1292
Score = 46.6 bits (109), Expect(2) = 7e-11
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -2
Query: 255 EISKLQIEAEGHTSLKNKRDSSIPNLLARYNLG 157
EISKLQ EAE H LKN+RDS+I N+ YNLG
Sbjct: 350 EISKLQTEAEAHMLLKNERDSTIQNIFFHYNLG 382
Score = 40.0 bits (92), Expect(2) = 7e-11
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -3
Query: 395 DTDEELMNCKTKFKERIAMLQCYKISKLEREMNDTPTS 282
DT EEL K+KF+ER+A+L KI K+EREM DT T+
Sbjct: 300 DTIEELKEWKSKFEERLALLGT-KIRKMEREMVDTETT 336
>gb|AAB88538.1| putative DDB p127-associated protein [Homo sapiens]
Length = 237
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -3
Query: 395 DTDEELMNCKTKFKERIAMLQCYKISKLEREMND 294
DT EE+ N KTKFKE I K LE ++ND
Sbjct: 78 DTAEEINNMKTKFKETIE-----KCDNLEHKLND 106
>gb|AAC24200.1| BRCA1-associated protein 2 [Homo sapiens]
Length = 600
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -3
Query: 395 DTDEELMNCKTKFKERIAMLQCYKISKLEREMND 294
DT EE+ N KTKFKE I K LE ++ND
Sbjct: 433 DTAEEINNMKTKFKETIE-----KCDNLEHKLND 461
>ref|NP_006759.2| BRCA1 associated protein [Homo sapiens]
Length = 592
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -3
Query: 395 DTDEELMNCKTKFKERIAMLQCYKISKLEREMND 294
DT EE+ N KTKFKE I K LE ++ND
Sbjct: 433 DTAEEINNMKTKFKETIE-----KCDNLEHKLND 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,944,922
Number of Sequences: 1393205
Number of extensions: 6500608
Number of successful extensions: 14193
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14191
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
