Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003873A_C01 KMC003873A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA12492.1| agCP10990 [Anopheles gambiae str. PEST] 34 1.7
gb|AAF35929.1|AC005929_1 Quinone Oxidoreductase [Leishmania majo... 33 3.0
gb|AAK55872.1|AF267205_2 ATP synthase gamma subunit [Candidatus ... 33 3.9
gb|AAD54529.1| cytochrome c oxidase subunit 1 [Spirometra manson... 32 5.1
ref|NP_716433.1| MATE efflux family protein [Shewanella oneidens... 32 6.6
>gb|EAA12492.1| agCP10990 [Anopheles gambiae str. PEST]
Length = 262
Score = 33.9 bits (76), Expect = 1.7
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 324 EIQNLILQKL*KRDSAVQKRNTQLKL*EDGCREGVHDKRKMNIQNFREHGRTNPTNL 494
E+ +LIL+K K+ +K N L CR+ + K+ M + +EH RT PT L
Sbjct: 170 EVSSLILEKQQKKRKTSRKSNAFCAL----CRKRLTPKQTMRVHMQQEHSRTVPTEL 222
>gb|AAF35929.1|AC005929_1 Quinone Oxidoreductase [Leishmania major]
gi|21629346|gb|AAM69023.1|AC125735_53 Quinone
Oxidoreductase [Leishmania major]
Length = 332
Score = 33.1 bits (74), Expect = 3.0
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = +1
Query: 415 AGKVSTIRGK*TSKTFGNTEGLIQPISTLELGRMNAM 525
AG +S +R + TFGN G + P+S LEL R ++
Sbjct: 228 AGSLSVLRPRGYMITFGNASGAVPPVSPLELSRAGSV 264
>gb|AAK55872.1|AF267205_2 ATP synthase gamma subunit [Candidatus Carsonella ruddii]
Length = 252
Score = 32.7 bits (73), Expect = 3.9
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +2
Query: 194 NMKNYRNVFFFQQKYLQITVVTHHQEEFSSKK 289
N KNY+NV+FF KY+ + + F++KK
Sbjct: 140 NFKNYKNVYFFSSKYINNIIKIIQTKLFNNKK 171
>gb|AAD54529.1| cytochrome c oxidase subunit 1 [Spirometra mansonoides]
Length = 147
Score = 32.3 bits (72), Expect = 5.1
Identities = 26/94 (27%), Positives = 38/94 (39%), Gaps = 3/94 (3%)
Frame = -1
Query: 298 GKLFFTAKFFLVVCYYSYL*IFLLEKKDISVVFHV*WQLETIMCWWERSPKHVDSTALLL 119
G L TA F L C++ + I H+ L I CWW S H + +
Sbjct: 45 GDLHHTAHFALTACHFVLV---------IFTTLHISLSLHAISCWW--SSPHCXFRSHCM 93
Query: 118 WFTLSNV---VLFVSYLFQILLVLEHTIHLILLL 26
F L ++ F +LV+ T+H+ LLL
Sbjct: 94 PFRLGDLHHTADFALTACHFVLVIFTTLHISLLL 127
>ref|NP_716433.1| MATE efflux family protein [Shewanella oneidensis MR-1]
gi|24346354|gb|AAN53878.1|AE015525_1 MATE efflux family
protein [Shewanella oneidensis MR-1]
Length = 453
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/129 (22%), Positives = 55/129 (42%)
Frame = -1
Query: 445 IFLLSWTPSLQPSSYNFSCVFLF*TAESLFYSFCKMRFWISKAQQGWEWGKLFFTAKFFL 266
I+ +S +L ++Y + Y F ++ Q G+ GK +F +
Sbjct: 260 IYFISQMGTLSLTAYTYGL-----NISRFIYCFSVALGQAAQIQTGYYVGKQWFDE---I 311
Query: 265 VVCYYSYL*IFLLEKKDISVVFHV*WQLETIMCWWERSPKHVDSTALLLWFTLSNVVLFV 86
V Y + + I ++F WQ TI+ W +P+ + TALLL L ++ L
Sbjct: 312 TVRVQKYCLVGFIVSLAIVLIFF--WQRFTIVGWLSENPEVIQLTALLL---LGSIALET 366
Query: 85 SYLFQILLV 59
+F ++++
Sbjct: 367 GRVFNLVII 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,778,091
Number of Sequences: 1393205
Number of extensions: 12865721
Number of successful extensions: 27652
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27638
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
