Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003872A_C01 KMC003872A_c01
(379 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula] 123 6e-28
sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase)... 121 2e-27
gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (ja... 119 1e-26
emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula] 118 2e-26
gb|AAO00687.1| Putative Squalene monooxygenase [Oryza sativa (ja... 111 3e-24
>emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula]
Length = 526
Score = 123 bits (308), Expect = 6e-28
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = -1
Query: 379 SVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVP 200
S+VLHFFAVA++GVGRLL PFPSPKR+WIGARL+SGA+ I+ PIIKAEG+RQMFFPATVP
Sbjct: 456 SLVLHFFAVAVFGVGRLLLPFPSPKRVWIGARLLSGASGIILPIIKAEGIRQMFFPATVP 515
Query: 199 AYYRMPPVH 173
AYYR PPV+
Sbjct: 516 AYYRAPPVN 524
>sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase) (SE)
gi|2804278|dbj|BAA24448.1| squalene epoxidase [Panax
ginseng]
Length = 539
Score = 121 bits (304), Expect = 2e-27
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -1
Query: 379 SVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVP 200
S+ LHFFAVAIYGVGRLL PFPSPKR+W+GARLI GA+ I+FPIIK+EGLRQMFFPA VP
Sbjct: 471 SLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVP 530
Query: 199 AYYRMPPVH 173
AYYR PP+H
Sbjct: 531 AYYRAPPIH 539
>gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (japonica
cultivar-group)]
Length = 522
Score = 119 bits (297), Expect = 1e-26
Identities = 55/67 (82%), Positives = 61/67 (90%)
Frame = -1
Query: 379 SVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVP 200
S+V HFFAVAIYGVGRL+ P PSPKR+WIGARL+SGA I+FPIIKAEG+RQMFFPATVP
Sbjct: 453 SLVAHFFAVAIYGVGRLMLPVPSPKRMWIGARLVSGACGIIFPIIKAEGVRQMFFPATVP 512
Query: 199 AYYRMPP 179
AYYR PP
Sbjct: 513 AYYRAPP 519
>emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula]
Length = 519
Score = 118 bits (295), Expect = 2e-26
Identities = 55/67 (82%), Positives = 61/67 (90%)
Frame = -1
Query: 379 SVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVP 200
S+VLHFFAVAIYGVGRLL PFPSPKR+WIG RLI+ A+ I+ PIIKAEG+RQMFFPATVP
Sbjct: 451 SLVLHFFAVAIYGVGRLLLPFPSPKRLWIGIRLIASASGIILPIIKAEGIRQMFFPATVP 510
Query: 199 AYYRMPP 179
AYYR PP
Sbjct: 511 AYYRAPP 517
>gb|AAO00687.1| Putative Squalene monooxygenase [Oryza sativa (japonica
cultivar-group)]
Length = 604
Score = 111 bits (277), Expect = 3e-24
Identities = 52/66 (78%), Positives = 57/66 (85%)
Frame = -1
Query: 379 SVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVP 200
S+V HFFAVAIYGVGRL+ P PSPKR+WIG RLIS A I+FPIIKAEG+R MFFPATVP
Sbjct: 461 SLVAHFFAVAIYGVGRLMLPLPSPKRMWIGVRLISSACGIIFPIIKAEGVRHMFFPATVP 520
Query: 199 AYYRMP 182
AYYR P
Sbjct: 521 AYYRAP 526
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,687,351
Number of Sequences: 1393205
Number of extensions: 7709294
Number of successful extensions: 14996
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 14741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14989
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
