Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003871A_C01 KMC003871A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19827.1|AF202771_1 RUB1 conjugating enzyme [Arabidopsis th... 207 9e-53
pir||E85434 ubiquitin-protein ligase-like protein [imported] - A... 207 9e-53
gb|AAG23847.1| RUB1 conjugating enzyme [Lycopersicon esculentum] 204 6e-52
gb|AAN75193.1| RUB1 conjugating enzyme [Olea europaea] 195 3e-49
ref|NP_565440.1| RUB1-conjugating enzyme, putative; protein id: ... 193 1e-48
>gb|AAF19827.1|AF202771_1 RUB1 conjugating enzyme [Arabidopsis thaliana]
gi|15081636|gb|AAK82473.1| AT4g36800/C7A10_560
[Arabidopsis thaliana] gi|20453317|gb|AAM19897.1|
AT4g36800/C7A10_560 [Arabidopsis thaliana]
Length = 184
Score = 207 bits (526), Expect = 9e-53
Identities = 93/101 (92%), Positives = 99/101 (97%)
Frame = -1
Query: 542 VSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNS 363
VSP+YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGL+HLFTEPNS
Sbjct: 84 VSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNS 143
Query: 362 EDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM 240
EDPLNH+AA VLR+NPKLFE+NVRRAM GGYVGQTFFPRC+
Sbjct: 144 EDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFFPRCI 184
>pir||E85434 ubiquitin-protein ligase-like protein [imported] - Arabidopsis
thaliana gi|4006890|emb|CAB16820.1| ubiquitin--protein
ligase-like protein [Arabidopsis thaliana]
gi|7270629|emb|CAB80346.1| ubiquitin--protein
ligase-like protein [Arabidopsis thaliana]
Length = 183
Score = 207 bits (526), Expect = 9e-53
Identities = 93/101 (92%), Positives = 99/101 (97%)
Frame = -1
Query: 542 VSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNS 363
VSP+YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGL+HLFTEPNS
Sbjct: 83 VSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNS 142
Query: 362 EDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM 240
EDPLNH+AA VLR+NPKLFE+NVRRAM GGYVGQTFFPRC+
Sbjct: 143 EDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFFPRCI 183
>gb|AAG23847.1| RUB1 conjugating enzyme [Lycopersicon esculentum]
Length = 154
Score = 204 bits (519), Expect = 6e-52
Identities = 92/101 (91%), Positives = 97/101 (95%)
Frame = -1
Query: 542 VSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNS 363
+SPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLYHLFTEPN
Sbjct: 54 ISPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNH 113
Query: 362 EDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM 240
EDPLNH+AA VLR+NPK+FESNVRRAM GGYVGQTFF RCM
Sbjct: 114 EDPLNHDAAAVLRDNPKMFESNVRRAMHGGYVGQTFFTRCM 154
>gb|AAN75193.1| RUB1 conjugating enzyme [Olea europaea]
Length = 183
Score = 195 bits (495), Expect = 3e-49
Identities = 88/101 (87%), Positives = 96/101 (94%)
Frame = -1
Query: 542 VSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNS 363
+S +YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLYHLFTEPN
Sbjct: 83 ISTMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNH 142
Query: 362 EDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM 240
EDPLN +AA VLR+NPK+FESNVRRAMAGGYVGQ+FF RC+
Sbjct: 143 EDPLNPDAAAVLRDNPKMFESNVRRAMAGGYVGQSFFNRCI 183
>ref|NP_565440.1| RUB1-conjugating enzyme, putative; protein id: At2g18600.1
[Arabidopsis thaliana] gi|25411885|pir||C84566 probable
ubiquitin-conjugating enzyme E2 [imported] - Arabidopsis
thaliana gi|4217999|gb|AAD12207.1| RUB1-conjugating
enzyme, putative [Arabidopsis thaliana]
gi|28393052|gb|AAO41960.1| putative RUB1-conjugating
enzyme [Arabidopsis thaliana] gi|28827388|gb|AAO50538.1|
putative RUB1-conjugating enzyme [Arabidopsis thaliana]
Length = 185
Score = 193 bits (491), Expect = 1e-48
Identities = 90/101 (89%), Positives = 93/101 (91%)
Frame = -1
Query: 542 VSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNS 363
VS +YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGL+HLFTEPN
Sbjct: 85 VSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNY 144
Query: 362 EDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM 240
EDPLNHEAA VLR+NPK FE NVRRAM GG VGQT FPRCM
Sbjct: 145 EDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTSFPRCM 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,517,232
Number of Sequences: 1393205
Number of extensions: 10496262
Number of successful extensions: 22937
Number of sequences better than 10.0: 542
Number of HSP's better than 10.0 without gapping: 22146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22704
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
