Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003870A_C02 KMC003870A_c02
(686 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193830.1| translation initiation factor eIF3 - like prote... 128 6e-29
gb|AAL38704.1| putative translation initiation factor eIF3 [Arab... 128 6e-29
gb|AAG53638.1|AF291714_1 initiation factor 3d [Arabidopsis thali... 128 6e-29
ref|NP_199245.1| eukaryotic translation initiation factor 3 subu... 126 2e-28
gb|EAA07485.1| agCP1322 [Anopheles gambiae str. PEST] 69 8e-11
>ref|NP_193830.1| translation initiation factor eIF3 - like protein; protein id:
At4g20980.1, supported by cDNA: gi_17528987 [Arabidopsis
thaliana] gi|6685535|sp|P56820|IF37_ARATH Eukaryotic
translation initiation factor 3 subunit 7 (eIF-3 zeta)
(eIF3d) (p66) gi|7486971|pir||T10640 hypothetical
protein T13K14.140 - Arabidopsis thaliana
gi|5262788|emb|CAB45893.1| translation initiation factor
eIF3-like protein [Arabidopsis thaliana]
gi|7268895|emb|CAB79098.1| translation initiation factor
eIF3-like protein [Arabidopsis thaliana]
Length = 591
Score = 128 bits (322), Expect = 6e-29
Identities = 62/82 (75%), Positives = 70/82 (84%), Gaps = 1/82 (1%)
Frame = -3
Query: 684 WGIVKSIVNLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAE 505
WGIVKSIV+LCMKL+EGKYVLVKDPSKPQVRIYEVP +AFENDYVEEPLPEDEQVQP E
Sbjct: 507 WGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEE 566
Query: 504 GADGEEAA-ATTNDVEDKPVED 442
+G EA+ A T + E+K +D
Sbjct: 567 NTEGAEASVAATKETEEKKADD 588
>gb|AAL38704.1| putative translation initiation factor eIF3 [Arabidopsis thaliana]
Length = 591
Score = 128 bits (322), Expect = 6e-29
Identities = 62/82 (75%), Positives = 70/82 (84%), Gaps = 1/82 (1%)
Frame = -3
Query: 684 WGIVKSIVNLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAE 505
WGIVKSIV+LCMKL+EGKYVLVKDPSKPQVRIYEVP +AFENDYVEEPLPEDEQVQP E
Sbjct: 507 WGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEE 566
Query: 504 GADGEEAA-ATTNDVEDKPVED 442
+G EA+ A T + E+K +D
Sbjct: 567 NTEGAEASVAATKETEEKKADD 588
>gb|AAG53638.1|AF291714_1 initiation factor 3d [Arabidopsis thaliana]
Length = 418
Score = 128 bits (322), Expect = 6e-29
Identities = 62/82 (75%), Positives = 70/82 (84%), Gaps = 1/82 (1%)
Frame = -3
Query: 684 WGIVKSIVNLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAE 505
WGIVKSIV+LCMKL+EGKYVLVKDPSKPQVRIYEVP +AFENDYVEEPLPEDEQVQP E
Sbjct: 334 WGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEE 393
Query: 504 GADGEEAA-ATTNDVEDKPVED 442
+G EA+ A T + E+K +D
Sbjct: 394 NTEGAEASVAATKETEEKKADD 415
>ref|NP_199245.1| eukaryotic translation initiation factor 3 subunit 7; protein id:
At5g44320.1 [Arabidopsis thaliana]
gi|10176887|dbj|BAB10117.1| eukaryotic translation
initiation factor 3 subunit 7 [Arabidopsis thaliana]
Length = 588
Score = 126 bits (317), Expect = 2e-28
Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 4/87 (4%)
Frame = -3
Query: 684 WGIVKSIVNLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAE 505
WGIVKSIV+LCMKL+EGKYVLVKDPSKPQVRIYEVPA+AF+NDYVEEPLPEDEQVQPP E
Sbjct: 502 WGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPADAFDNDYVEEPLPEDEQVQPPEE 561
Query: 504 ----GADGEEAAATTNDVEDKPVEDQA 436
GA+ ++T VEDK E +A
Sbjct: 562 NTDAGAETNGVSSTNVAVEDKKSEVEA 588
>gb|EAA07485.1| agCP1322 [Anopheles gambiae str. PEST]
Length = 591
Score = 68.6 bits (166), Expect = 8e-11
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = -3
Query: 684 WGIVKSIVNLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAE 505
WGI++ I+++CMK +GKY+++KDP+KP VR+Y++P N F++D E + E QP
Sbjct: 501 WGILRCIIDICMKQKDGKYLIMKDPNKPMVRLYDIPDNTFDSDGEGEEGDDGEAFQP--- 557
Query: 504 GADGEEAAATTN 469
G AAA+T+
Sbjct: 558 -MYGYSAAASTS 568
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,251,797
Number of Sequences: 1393205
Number of extensions: 12462870
Number of successful extensions: 36417
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 32634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35874
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
