Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003865A_C01 KMC003865A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566946.1| putative protein; protein id: At3g51140.1, supp... 168 5e-41
pir||T45745 hypothetical protein F24M12.180 - Arabidopsis thalia... 168 5e-41
ref|NP_197695.1| putative protein; protein id: At5g23040.1 [Arab... 75 6e-13
ref|NP_487299.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 41 0.012
ref|NP_440462.1| unknown protein [Synechocystis sp. PCC 6803] gi... 37 0.22
>ref|NP_566946.1| putative protein; protein id: At3g51140.1, supported by cDNA:
266414., supported by cDNA: gi_14334851, supported by
cDNA: gi_17104692 [Arabidopsis thaliana]
gi|14334852|gb|AAK59604.1| unknown protein [Arabidopsis
thaliana] gi|17104693|gb|AAL34235.1| unknown protein
[Arabidopsis thaliana] gi|21554869|gb|AAM63714.1|
unknown [Arabidopsis thaliana]
Length = 278
Score = 168 bits (425), Expect = 5e-41
Identities = 84/125 (67%), Positives = 100/125 (79%)
Frame = -2
Query: 564 VNQSKFLQAIRGRFQTPSTKFIIKTSLVFLLLGVLTVLFPTEEGPTLQVALSLIATIYFI 385
V QSK + + RFQTP ++KT++ F +LGVLTVLFPTEEGPTLQV LSLIAT YFI
Sbjct: 156 VRQSKVVNFVFERFQTPPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFI 215
Query: 384 HDRLKSQIRAFLYGVGAFIFSWLLGTFLMVSVIPPIRVLKGPCAFEVISSVLSYVFLWVS 205
H RL+ ++ FLYG GAFIFSWL+GTFLMVSVIPP +KGP FEV+SS+LSYV LWV+
Sbjct: 216 HQRLQKKLWTFLYGAGAFIFSWLVGTFLMVSVIPPF--IKGPRGFEVMSSLLSYVLLWVA 273
Query: 204 STYLR 190
S+YLR
Sbjct: 274 SSYLR 278
>pir||T45745 hypothetical protein F24M12.180 - Arabidopsis thaliana
gi|6562266|emb|CAB62636.1| putative protein [Arabidopsis
thaliana]
Length = 247
Score = 168 bits (425), Expect = 5e-41
Identities = 84/125 (67%), Positives = 100/125 (79%)
Frame = -2
Query: 564 VNQSKFLQAIRGRFQTPSTKFIIKTSLVFLLLGVLTVLFPTEEGPTLQVALSLIATIYFI 385
V QSK + + RFQTP ++KT++ F +LGVLTVLFPTEEGPTLQV LSLIAT YFI
Sbjct: 125 VRQSKVVNFVFERFQTPPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFI 184
Query: 384 HDRLKSQIRAFLYGVGAFIFSWLLGTFLMVSVIPPIRVLKGPCAFEVISSVLSYVFLWVS 205
H RL+ ++ FLYG GAFIFSWL+GTFLMVSVIPP +KGP FEV+SS+LSYV LWV+
Sbjct: 185 HQRLQKKLWTFLYGAGAFIFSWLVGTFLMVSVIPPF--IKGPRGFEVMSSLLSYVLLWVA 242
Query: 204 STYLR 190
S+YLR
Sbjct: 243 SSYLR 247
>ref|NP_197695.1| putative protein; protein id: At5g23040.1 [Arabidopsis thaliana]
gi|9759362|dbj|BAB09821.1|
emb|CAB62636.1~gene_id:MYJ24.3~similar to unknown
protein [Arabidopsis thaliana]
gi|21928168|gb|AAM78111.1| AT5g23040/MYJ24_3
[Arabidopsis thaliana] gi|23505829|gb|AAN28774.1|
At5g23040/MYJ24_3 [Arabidopsis thaliana]
Length = 258
Score = 75.1 bits (183), Expect = 6e-13
Identities = 39/120 (32%), Positives = 74/120 (61%)
Frame = -2
Query: 549 FLQAIRGRFQTPSTKFIIKTSLVFLLLGVLTVLFPTEEGPTLQVALSLIATIYFIHDRLK 370
+L+A+ + P I + +F +G +++ E GP QVA+SL A +YF++++ K
Sbjct: 141 WLKALLDFVEMPPMDTIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTK 200
Query: 369 SQIRAFLYGVGAFIFSWLLGTFLMVSVIPPIRVLKGPCAFEVISSVLSYVFLWVSSTYLR 190
S RA L G+GA + W G+ L++ +IP +++ E+++S+++YVFL++S T+L+
Sbjct: 201 SLGRACLIGIGALVAGWFCGS-LIIPMIPTF-LIQPTWTLELLTSLVAYVFLFLSCTFLK 258
>ref|NP_487299.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381750|pir||AD2213
hypothetical protein all3259 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132354|dbj|BAB74958.1|
ORF_ID:all3259~hypothetical protein [Nostoc sp. PCC
7120]
Length = 208
Score = 40.8 bits (94), Expect = 0.012
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = -2
Query: 516 PSTKFIIKTSLVFLLLGVLTVLFPTEEGPTLQVALSL-IATIYFIHDRLKSQI-RAFLYG 343
PS ++ + FL L ++V +P LQ+AL + + T F +R + + RA L+
Sbjct: 100 PSGTDVLLPGVWFLGLSAISVFYPAAGDQVLQLALVIGVGTSIFFLNRKEGRFGRAVLFT 159
Query: 342 VGAFIFSWLLGTFLMVSVIPPIRVLKGPCAFEVISSVLSYVFLWVSSTYLR 190
+ I + G + ++P I + S+VL+++ LW+ S++LR
Sbjct: 160 LVGLIIGLITGGLIAGLLLPQIPAISFTA--NQFSTVLTFILLWLISSFLR 208
>ref|NP_440462.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470542|pir||S75228
hypothetical protein slr1918 - Synechocystis sp. (strain
PCC 6803) gi|1652218|dbj|BAA17142.1|
ORF_ID:slr1918~unknown protein [Synechocystis sp. PCC
6803]
Length = 228
Score = 36.6 bits (83), Expect = 0.22
Identities = 20/80 (25%), Positives = 46/80 (57%)
Frame = -2
Query: 429 TLQVALSLIATIYFIHDRLKSQIRAFLYGVGAFIFSWLLGTFLMVSVIPPIRVLKGPCAF 250
+L + + + I+F++ + + +A L +GA + +LGT ++ ++ V GP
Sbjct: 151 SLLLVVGVFGNIFFLNRKQRKFGKALLLSLGALLVGIILGT-VLGQLLLGANVAIGP-NL 208
Query: 249 EVISSVLSYVFLWVSSTYLR 190
E IS+ ++++ LW+ S+++R
Sbjct: 209 EQISATIAFIILWLISSFVR 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,798,130
Number of Sequences: 1393205
Number of extensions: 8454951
Number of successful extensions: 17811
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17800
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
