Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003863A_C01 KMC003863A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182034.1| putative PREG1-like negative regulator; protein... 33 1.4
ref|NP_505797.1| Putative endoplasmic reticulum membrane protein... 32 3.2
ref|NP_710623.1| hypothetical protein [Leptospira interrogans se... 32 4.2
ref|NP_191614.1| regulatory protein - like; protein id: At3g6055... 32 4.2
gb|AAM92076.1|AF458101_1 57 kDa cell surface protein precursor M... 30 9.3
>ref|NP_182034.1| putative PREG1-like negative regulator; protein id: At2g45080.1,
supported by cDNA: gi_18491282 [Arabidopsis thaliana]
gi|25408923|pir||C84886 probable PREG1-like negative
regulator [imported] - Arabidopsis thaliana
gi|18491283|gb|AAL69466.1| At2g45080/T14P1.11
[Arabidopsis thaliana]
Length = 222
Score = 33.1 bits (74), Expect = 1.4
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -3
Query: 461 IERTLRCAEEIKTRQI----EERGYTQIARVML 375
IE+ LRCAEEIK+RQI + + Q +R+ML
Sbjct: 190 IEKALRCAEEIKSRQIVQDPKHHHHHQFSRIML 222
>ref|NP_505797.1| Putative endoplasmic reticulum membrane protein, with a
transmembrane domain, of eukaryotic origin (60.2 kD)
[Caenorhabditis elegans] gi|7499312|pir||T21059
hypothetical protein F17C11.7 - Caenorhabditis elegans
gi|3876059|emb|CAA96629.1| Hypothetical protein F17C11.7
[Caenorhabditis elegans]
Length = 531
Score = 32.0 bits (71), Expect = 3.2
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 221 LSLGLTCCSKISIPQQTFRFTLICTDNLHFLHLQAEKET*NRKKKSLTIHSTTLHVRFVC 400
LS G TC I +Q R D H +H+ A + + TIHS + V
Sbjct: 387 LSAGQTCELTIPFDKQLLRLEQYPPDANHGMHIPAASVYIQKSTSTYTIHSNAI---LVL 443
Query: 401 IPFPQFAL 424
+P P F++
Sbjct: 444 LPVPDFSM 451
>ref|NP_710623.1| hypothetical protein [Leptospira interrogans serovar lai str.
56601] gi|24193851|gb|AAN47641.1|AE011231_4 hypothetical
protein [Leptospira interrogans serovar lai str. 56601]
Length = 287
Score = 31.6 bits (70), Expect = 4.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 123 MELIGVYLLDKSLDKLQ*VLFDPHPNGLKF 212
++LI +LL K KLQ +L DP P G KF
Sbjct: 233 LQLIHTFLLAKDYQKLQTLLSDPSPEGWKF 262
>ref|NP_191614.1| regulatory protein - like; protein id: At3g60550.1 [Arabidopsis
thaliana] gi|11358757|pir||T47866 regulatory
protein-like - Arabidopsis thaliana
gi|7288003|emb|CAB81841.1| regulatory protein-like
[Arabidopsis thaliana]
Length = 230
Score = 31.6 bits (70), Expect = 4.2
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Frame = -3
Query: 461 IERTLRCAEEIKTRQI------EERGYTQIARVML 375
IE+ LRCAEEIK+RQ+ + Q+AR++L
Sbjct: 196 IEKALRCAEEIKSRQMIIQDPKHHHHHHQLARILL 230
>gb|AAM92076.1|AF458101_1 57 kDa cell surface protein precursor Msa1 [Renibacterium
salmoninarum] gi|22095177|gb|AAM92077.1|AF458102_1 57
kDa cell surface protein precursor Msa2 [Renibacterium
salmoninarum]
Length = 558
Score = 30.4 bits (67), Expect = 9.3
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = -1
Query: 253 DFRTTSQAKGEGCTNFNPFGCGSKSTYWSLSNDLSSR 143
D T Q GEG T+F F S + W LSNDLS +
Sbjct: 518 DVAVTGQWNGEGKTSFGVFEHSSGA--WKLSNDLSGK 552
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,438,204
Number of Sequences: 1393205
Number of extensions: 8135853
Number of successful extensions: 15779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15774
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
