>KMC003862A_C01 KMC003862A_c01
tagaacttagaatatcatgacatgtgtgtggtcttcaccaagagagaaaaagcaggttca
tatAGCAAAAACACATTCTATTGTGAAGATTATTTCTCCTTTCTGGTTTCACCAATATCC
CAATTACAATGTAAACATTGTTACTAATCACTCAACAAAATAAAAAAACACCCTCAGTTG
ATAGAACATATTCTGAGGAACCAAAATCAGCTTCATCTTGAAAACACAGCAAAAACCAAC
CCAGCAGACATACCAACAATGCAAAGAAACGAAACCCCACGAACCCTCACAAAGAAAGCA
TTCAACTGCTTCGCAACTTGCATAGTCAGCGTCAGAATCTGCAACCTACCTTGCTCCTCC
ATCTTCTTCAAGAAATGCATCGGCTTCAAACACTGGCGAAGCATAAACGCCAGAGAAAAC
GGCAACGCAAACGCCACAAAACTCTGCACCGAAACCTCAGGGATCGGGGAAGATCTCGTC
ACGTAGGTGATCCAAGCTCCAAGACCAAGCTGAACCAGACCCAGAACCGCCACAACTCTG
CTCAAACCATACACATTCT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003862A_C01 KMC003862A_c01
         (559 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566431.1| expressed protein; protein id: At3g12650.1, sup...   128  5e-29
dbj|BAA86949.1| ORF3 [TTV-like mini virus]                             41  0.011
dbj|BAC41104.1| unnamed protein product [Mus musculus]                 40  0.025
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]                       39  0.033
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]                  39  0.033

>ref|NP_566431.1| expressed protein; protein id: At3g12650.1, supported by cDNA:
           gi_16323108 [Arabidopsis thaliana]
           gi|11994406|dbj|BAB02408.1| gene_id:MBK21.2~unknown
           protein [Arabidopsis thaliana]
           gi|12321980|gb|AAG51037.1|AC069474_36 hypothetical
           protein; 9197-9913 [Arabidopsis thaliana]
           gi|16323109|gb|AAL15289.1| AT3g12650/T2E22_103
           [Arabidopsis thaliana] gi|21360415|gb|AAM47323.1|
           AT3g12650/T2E22_103 [Arabidopsis thaliana]
          Length = 238

 Score =  128 bits (321), Expect = 5e-29
 Identities = 64/113 (56%), Positives = 82/113 (71%)
 Frame = -3

Query: 557 NVYGLSRVVAVLGLVQLGLGAWITYVTRSSPIPEVSVQSFVAFALPFSLAFMLRQCLKPM 378
           N+Y LS  +  LGL QL LGA I Y TR+ P+ E+++QS +AF  PF++A M+R+ LKPM
Sbjct: 125 NMYSLSGAMGALGLTQLILGAAILYATRADPMKEMTIQSCIAFGFPFAMALMVRRSLKPM 184

Query: 377 HFLKKMEEQGRLQILTLTMQVAKQLNAFFVRVRGVSFLCIVGMSAGLVFAVFS 219
           +F KKMEE GRLQILTLT+QVAK LN  FVR R VS LC+V +  G +F + S
Sbjct: 185 YFFKKMEELGRLQILTLTLQVAKNLNLLFVRARVVSILCVVALCFGNLFLLLS 237

>dbj|BAA86949.1| ORF3 [TTV-like mini virus]
          Length = 130

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 36/134 (26%), Positives = 63/134 (46%), Gaps = 1/134 (0%)
 Frame = +3

Query: 144 LITQQNKKTPSVDRTYSEEPKSASS*KHSKNQPSRHTNNAKKRNPTNPHKESIQLLRNLH 323
           L TQQN+K           P+  +S K  +++   + NN    + T     S  LL+   
Sbjct: 17  LQTQQNRKN---------SPRPVTSSKDFRSRVQGNQNNTIFTHLTKNAANSQCLLQ--- 64

Query: 324 SQRQNLQPTLLL-HLLQEMHRLQTLAKHKRQRKRQRKRHKTLHRNLRDRGRSRHVGDPSS 500
              ++L+ TL L H LQ + +  + +KHKR+R + R+R K+ H +     R +     SS
Sbjct: 65  ---KDLKKTLQLQHFLQTLEQKTSPSKHKRKRSKHRRRKKSKHHS-----RQKTTSSSSS 116

Query: 501 KTKLNQTQNRHNSA 542
             + + T++   S+
Sbjct: 117 SERESTTESESESS 130

>dbj|BAC41104.1| unnamed protein product [Mus musculus]
          Length = 2607

 Score = 39.7 bits (91), Expect = 0.025
 Identities = 26/106 (24%), Positives = 52/106 (48%), Gaps = 1/106 (0%)
 Frame = +2

Query: 218  LKTQQKPTQQTYQQCKETKPHEPSQRKHS-TASQLA*SASESATYLAPPSSSRNASASNT 394
            LK    PT    +  +E +P EP+  K    +S  + S+S S++  +  SSS ++S+S++
Sbjct: 2434 LKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2493

Query: 395  GEA*TPEKTATQTPQNSAPKPQGSGKISSRR*SKLQDQAEPDPEPP 532
              + +   +++ +P  + P PQ   K +S +     ++    P  P
Sbjct: 2494 SSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERGSRSPRKP 2539

>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
          Length = 1754

 Score = 39.3 bits (90), Expect = 0.033
 Identities = 26/106 (24%), Positives = 52/106 (48%), Gaps = 1/106 (0%)
 Frame = +2

Query: 218  LKTQQKPTQQTYQQCKETKPHEPSQRKHS-TASQLA*SASESATYLAPPSSSRNASASNT 394
            LK    PT    +  +E +P EP+  K    +S  + S+S S++  +  SSS ++S+S++
Sbjct: 1581 LKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1640

Query: 395  GEA*TPEKTATQTPQNSAPKPQGSGKISSRR*SKLQDQAEPDPEPP 532
              + +   +++ +P  + P PQ   K +S +     ++    P  P
Sbjct: 1641 SSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 1686

>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
          Length = 2607

 Score = 39.3 bits (90), Expect = 0.033
 Identities = 26/106 (24%), Positives = 52/106 (48%), Gaps = 1/106 (0%)
 Frame = +2

Query: 218  LKTQQKPTQQTYQQCKETKPHEPSQRKHS-TASQLA*SASESATYLAPPSSSRNASASNT 394
            LK    PT    +  +E +P EP+  K    +S  + S+S S++  +  SSS ++S+S++
Sbjct: 2434 LKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2493

Query: 395  GEA*TPEKTATQTPQNSAPKPQGSGKISSRR*SKLQDQAEPDPEPP 532
              + +   +++ +P  + P PQ   K +S +     ++    P  P
Sbjct: 2494 SSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 2539

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,759,258
Number of Sequences: 1393205
Number of extensions: 11402102
Number of successful extensions: 51773
Number of sequences better than 10.0: 267
Number of HSP's better than 10.0 without gapping: 44129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50313
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MF056f04_f BP031248 1 339 2 MWM133g04_f AV766834 64 452 3 SPD070g10_f BP049630 83 439 4 GNf080c09 BP073263 84 562

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