Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003859A_C01 KMC003859A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA20583.1| hypothetical protein [Plasmodium yoelii yoelii] 32 7.0
ref|NP_039292.1| ORF2136 [Marchantia polymorpha] gi|140550|sp|P0... 31 9.1
>gb|EAA20583.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 861
Score = 31.6 bits (70), Expect = 7.0
Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Frame = +1
Query: 19 NTIYFHFLKKQYYINKRKI*KSALSIFEY-NNKFQGQAG---GLKIGRVSEHHQVSGSRN 186
N+ Y+ FLK +Y++ K + I+EY NKF ++ KI E H+ +G +
Sbjct: 625 NSEYYKFLKNYFYLDYNK--TNFTCIYEYRKNKFTTESNKHVARKIDTPREMHEKNGEKK 682
Query: 187 YKKSKDPQGFRTKSPRTTGHH 249
+K+ + G + + G +
Sbjct: 683 DEKNGEKNGEKKNEGQNEGQN 703
>ref|NP_039292.1| ORF2136 [Marchantia polymorpha] gi|140550|sp|P09975|YCF2_MARPO
Hypothetical 259.9 kDa protein ycf2 (ORF 2136)
gi|81341|pir||A05037 hypothetical protein 2136 -
liverwort (Marchantia polymorpha) chloroplast
gi|11665|emb|CAA28078.1| ORF2136 [Marchantia polymorpha]
Length = 2136
Score = 31.2 bits (69), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +1
Query: 4 FFNRYNTIYFHFLKKQYYINKRKI*KSALSIFEYNNKF 117
F+ N + F +LKK YYIN + KS L +N+F
Sbjct: 421 FYFDSNNLLFDWLKKNYYINNKPFLKSFLIYSSISNQF 458
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,547,143
Number of Sequences: 1393205
Number of extensions: 9529390
Number of successful extensions: 24135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24133
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
