Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003858A_C01 KMC003858A_c01
(277 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09080 probable chloroquine resistance protein CG2 (strain ... 32 2.3
gb|AAC47842.1| CG2 [Plasmodium falciparum] 32 2.3
ref|NP_704037.1| Cg2 protein [Plasmodium falciparum 3D7] gi|2349... 32 2.3
pir||T09079 probable chloroquine resistance protein CG2 (strain ... 32 2.3
>pir||T09080 probable chloroquine resistance protein CG2 (strain HB3) - malaria
parasite (Plasmodium falciparum)
gi|2642516|gb|AAC47854.1| CG2 [Plasmodium falciparum]
Length = 2819
Score = 32.0 bits (71), Expect = 2.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 7 NDRKYCSNFVYYLTMQNYIMKPKWDILTSMMVFFTSYFLP 126
ND + + +++ YI+K K I++S + FF+ YFLP
Sbjct: 1850 NDLRVFEEYEMFISNIKYILKMKNKIISSEVFFFSPYFLP 1889
>gb|AAC47842.1| CG2 [Plasmodium falciparum]
Length = 2742
Score = 32.0 bits (71), Expect = 2.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 7 NDRKYCSNFVYYLTMQNYIMKPKWDILTSMMVFFTSYFLP 126
ND + + +++ YI+K K I++S + FF+ YFLP
Sbjct: 1865 NDLRVFEEYEMFISNIKYILKMKNKIISSEVFFFSPYFLP 1904
>ref|NP_704037.1| Cg2 protein [Plasmodium falciparum 3D7] gi|23498775|emb|CAD50845.1|
Cg2 protein [Plasmodium falciparum 3D7]
Length = 2729
Score = 32.0 bits (71), Expect = 2.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 7 NDRKYCSNFVYYLTMQNYIMKPKWDILTSMMVFFTSYFLP 126
ND + + +++ YI+K K I++S + FF+ YFLP
Sbjct: 1838 NDLRVFEEYEMFISNIKYILKMKNKIISSEVFFFSPYFLP 1877
>pir||T09079 probable chloroquine resistance protein CG2 (strain 7G8) - malaria
parasite (Plasmodium falciparum)
gi|2642514|gb|AAC47853.1| CG2 [Plasmodium falciparum]
Length = 2708
Score = 32.0 bits (71), Expect = 2.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 7 NDRKYCSNFVYYLTMQNYIMKPKWDILTSMMVFFTSYFLP 126
ND + + +++ YI+K K I++S + FF+ YFLP
Sbjct: 1845 NDLRVFEEYEMFISNIKYILKMKNKIISSEVFFFSPYFLP 1884
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,719,694
Number of Sequences: 1393205
Number of extensions: 4340053
Number of successful extensions: 8578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8577
length of database: 448,689,247
effective HSP length: 67
effective length of database: 355,344,512
effective search space used: 8528268288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
