Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003857A_C01 KMC003857A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK01950.1| protein kinase AtSIK [Arabidopsis thaliana] 118 5e-26
ref|NP_187488.1| putative protein kinase; protein id: At3g08760.... 117 9e-26
dbj|BAB85309.1| similar to protein kinase AtSIK [Oryza sativa (j... 93 3e-18
ref|NP_064215.1| pR113 [Rat cytomegalovirus] gi|9800330|gb|AAF99... 41 0.013
ref|XP_125599.2| similar to hypothetical protein FLJ10159 [Homo ... 39 0.050
>gb|AAK01950.1| protein kinase AtSIK [Arabidopsis thaliana]
Length = 557
Score = 118 bits (296), Expect = 5e-26
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 7/122 (5%)
Frame = -3
Query: 595 SDRPTMRTVVEQLQTIQDVKYSCRFPLQEPAPFSG-KNMSRSPSLNGIV-CPA---PKFS 431
S+RPTMR +V+QL+ IQD+KYSCRFPL+EPAP + K+M RS SLN I+ PA P+ S
Sbjct: 440 SERPTMRNIVDQLKIIQDMKYSCRFPLREPAPVAARKHMGRSSSLNTIIWTPASVPPRSS 499
Query: 430 YSPSPPSLAPASVSPPRWSGV--PLLLPPRACSSTLALEELDRQESRKSSSSASRRASVE 257
+SPSPP P SVSP R + P + PPRACSS LEE+ R+E R+SSS++ RR S+E
Sbjct: 500 FSPSPPPRRP-SVSPTRGRTLVFPPVFPPRACSS---LEEMAREEVRRSSSASGRRTSLE 555
Query: 256 GF 251
GF
Sbjct: 556 GF 557
>ref|NP_187488.1| putative protein kinase; protein id: At3g08760.1, supported by
cDNA: gi_14581444 [Arabidopsis thaliana]
gi|12322736|gb|AAG51360.1|AC012562_21 putative protein
kinase; 70907-69052 [Arabidopsis thaliana]
Length = 557
Score = 117 bits (294), Expect = 9e-26
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 7/122 (5%)
Frame = -3
Query: 595 SDRPTMRTVVEQLQTIQDVKYSCRFPLQEPAP-FSGKNMSRSPSLNGIV-CPA---PKFS 431
S+RPTMR +V+QL+ IQD+KYSCRFPL+EPAP + K+M RS SLN I+ PA P+ S
Sbjct: 440 SERPTMRNIVDQLKIIQDMKYSCRFPLREPAPVVARKHMGRSSSLNTIIWTPASVPPRSS 499
Query: 430 YSPSPPSLAPASVSPPRWSGV--PLLLPPRACSSTLALEELDRQESRKSSSSASRRASVE 257
+SPSPP P SVSP R + P + PPRACSS LEE+ R+E R+SSS++ RR S+E
Sbjct: 500 FSPSPPPRRP-SVSPTRGRTLVFPPVFPPRACSS---LEEMAREEVRRSSSASGRRTSLE 555
Query: 256 GF 251
GF
Sbjct: 556 GF 557
>dbj|BAB85309.1| similar to protein kinase AtSIK [Oryza sativa (japonica
cultivar-group)] gi|19571064|dbj|BAB86490.1| P0485B12.21
[Oryza sativa (japonica cultivar-group)]
Length = 541
Score = 92.8 bits (229), Expect = 3e-18
Identities = 54/115 (46%), Positives = 71/115 (60%)
Frame = -3
Query: 595 SDRPTMRTVVEQLQTIQDVKYSCRFPLQEPAPFSGKNMSRSPSLNGIVCPAPKFSYSPSP 416
S+RPTMR VVE L ++QD+K CR+PLQEP+ K M +S SLNGI+ P ++SPSP
Sbjct: 432 SERPTMRAVVESLASVQDIKVPCRYPLQEPSAAPRKVMLKSTSLNGIIHHHPVVTFSPSP 491
Query: 415 PSLAPASVSPPRWSGVPLLLPPRACSSTLALEELDRQESRKSSSSASRRASVEGF 251
PS +SP S LLPPR ++ AL++ +KS S RR+ VEGF
Sbjct: 492 PSRNQHLLSPR--SSTSALLPPR---TSCALDDPRVSSIKKSPSPILRRSGVEGF 541
>ref|NP_064215.1| pR113 [Rat cytomegalovirus] gi|9800330|gb|AAF99204.1|AF232689_101
pR113 [rat cytomegalovirus Maastricht]
Length = 345
Score = 40.8 bits (94), Expect = 0.013
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 279 AEDDDLRLSCLSSSSKARVEEQARGGRRRGTPDHLGGETDAGASDGGEGE*LNFGAG 449
AEDDD+ ++ + S + +R E A GG H G AG SDGG G + G G
Sbjct: 59 AEDDDVTVADVQSLTDSRTRESAPGGGDHHQQHHHPGSEGAGVSDGGSGGGSSVGGG 115
>ref|XP_125599.2| similar to hypothetical protein FLJ10159 [Homo sapiens] [Mus
musculus]
Length = 532
Score = 38.9 bits (89), Expect = 0.050
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 514 QEPAPFSGKNMSRSPSLN----GIVCPAPKFSYSPSPPSLAPASVSPPRWSGVPLLLPPR 347
Q P P S +S S + N I P PK PS+ P SV PP G PL +PPR
Sbjct: 63 QGPGPSSSTTVSPSDTANCSVTKIPTPVPKSLPISETPSIPPVSVQPPASIGPPLGVPPR 122
Query: 346 A 344
+
Sbjct: 123 S 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,825,482
Number of Sequences: 1393205
Number of extensions: 13003078
Number of successful extensions: 51486
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 42545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49800
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
