Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003855A_C01 KMC003855A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O81363|RS4_PRUAR 40S ribosomal protein S4 gi|3264763|gb|AAC24... 178 6e-44
gb|AAM93434.1| 40S ribosomal S4 protein [Glycine max] 176 2e-43
dbj|BAB10257.1| ribosomal protein S4 [Arabidopsis thaliana] 173 2e-42
ref|NP_200650.1| ribosomal protein S4 - like; protein id: At5g58... 173 2e-42
ref|NP_568179.1| 40S ribosomal protein S4; protein id: At5g07090... 173 2e-42
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 gi|3264763|gb|AAC24585.1| 40S ribosomal
protein S4 [Prunus armeniaca]
Length = 261
Score = 178 bits (451), Expect = 6e-44
Identities = 86/97 (88%), Positives = 93/97 (95%)
Frame = -3
Query: 650 NKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKQKGSFDTIHVQDATGHEFATRLGNVF 471
NKIT+FIKFDVGNVVMVTGGRNRGRVGVIKNREK KGSF+TIHVQDATGHEFATRLGNVF
Sbjct: 163 NKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVF 222
Query: 470 MIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQQQAA 360
IGKG+KPWVSLPKG+GIKL+I+EEA+KRQAA Q AA
Sbjct: 223 TIGKGTKPWVSLPKGKGIKLTILEEAKKRQAAAQTAA 259
>gb|AAM93434.1| 40S ribosomal S4 protein [Glycine max]
Length = 264
Score = 176 bits (446), Expect = 2e-43
Identities = 85/98 (86%), Positives = 92/98 (93%)
Frame = -3
Query: 650 NKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKQKGSFDTIHVQDATGHEFATRLGNVF 471
NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNREK KGSF+TIHVQD+TGHEFATR+GNVF
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVF 226
Query: 470 MIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQQQAAA 357
IGKG+KPW+SLPKG+GIKLSIIEEARKR AAQQ AA
Sbjct: 227 TIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA 264
>dbj|BAB10257.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 244
Score = 173 bits (439), Expect = 2e-42
Identities = 83/96 (86%), Positives = 91/96 (94%)
Frame = -3
Query: 650 NKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKQKGSFDTIHVQDATGHEFATRLGNVF 471
NKI EFIKFDVGNVVMVTGGRNRGRVGVIKNREK KGSF+TIH+QD+TGHEFATRLGNV+
Sbjct: 149 NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVY 208
Query: 470 MIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQQQA 363
IGKG+KPWVSLPKG+GIKL+IIEEARKR A+QQ A
Sbjct: 209 TIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA 244
>ref|NP_200650.1| ribosomal protein S4 - like; protein id: At5g58420.1, supported by
cDNA: 22434., supported by cDNA: gi_16226258, supported
by cDNA: gi_17979232 [Arabidopsis thaliana]
gi|16226259|gb|AAL16117.1|AF428285_1 AT5g58420/mqj2_10
[Arabidopsis thaliana] gi|21592333|gb|AAM64284.1|
ribosomal protein S4-like [Arabidopsis thaliana]
Length = 262
Score = 173 bits (439), Expect = 2e-42
Identities = 83/96 (86%), Positives = 91/96 (94%)
Frame = -3
Query: 650 NKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKQKGSFDTIHVQDATGHEFATRLGNVF 471
NKI EFIKFDVGNVVMVTGGRNRGRVGVIKNREK KGSF+TIH+QD+TGHEFATRLGNV+
Sbjct: 167 NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVY 226
Query: 470 MIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQQQA 363
IGKG+KPWVSLPKG+GIKL+IIEEARKR A+QQ A
Sbjct: 227 TIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA 262
>ref|NP_568179.1| 40S ribosomal protein S4; protein id: At5g07090.1, supported by
cDNA: 13813., supported by cDNA: gi_15292998, supported
by cDNA: gi_17979542 [Arabidopsis thaliana]
gi|20143904|sp|P49204|RS4_ARATH 40S ribosomal protein S4
gi|11276521|pir||T48480 ribosomal protein S4 -
Arabidopsis thaliana gi|7546687|emb|CAB87265.1|
ribosomal protein S4 [Arabidopsis thaliana]
gi|15292999|gb|AAK93610.1| putative 40S ribosomal
protein S4 [Arabidopsis thaliana]
gi|17979543|gb|AAL50106.1| AT5g07090/T28J14_30
[Arabidopsis thaliana] gi|19310835|gb|AAL85148.1|
putative 40S ribosomal protein S4 [Arabidopsis thaliana]
gi|20147251|gb|AAM10339.1| AT5g07090/T28J14_30
[Arabidopsis thaliana] gi|21537414|gb|AAM61755.1| 40S
ribosomal protein S4 [Arabidopsis thaliana]
Length = 262
Score = 173 bits (439), Expect = 2e-42
Identities = 83/96 (86%), Positives = 91/96 (94%)
Frame = -3
Query: 650 NKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKQKGSFDTIHVQDATGHEFATRLGNVF 471
NKI EFIKFDVGNVVMVTGGRNRGRVGVIKNREK KGSF+TIH+QD+TGHEFATRLGNV+
Sbjct: 167 NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVY 226
Query: 470 MIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQQQA 363
IGKG+KPWVSLPKG+GIKL+IIEEARKR A+QQ A
Sbjct: 227 TIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,267,166
Number of Sequences: 1393205
Number of extensions: 11156072
Number of successful extensions: 40457
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 39239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40434
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
