Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003850A_C01 KMC003850A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189290.1| unknown protein; protein id: At3g26580.1 [Arabi... 164 8e-40
pir||T09217 protein sam2B - spinach gi|2253092|emb|CAA74590.1| h... 158 3e-38
ref|NP_485289.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 46 2e-04
gb|ZP_00111875.1| hypothetical protein [Nostoc punctiforme] 41 0.007
ref|NP_629131.1| putative phosphoenolpyruvate carboxykinase [Str... 34 1.2
>ref|NP_189290.1| unknown protein; protein id: At3g26580.1 [Arabidopsis thaliana]
gi|1402877|emb|CAA66827.1| unknown [Arabidopsis
thaliana] gi|1495257|emb|CAA66117.1| orf03 [Arabidopsis
thaliana] gi|9293937|dbj|BAB01840.1|
emb|CAA66827.1~gene_id:MFE16.11~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|22655244|gb|AAM98212.1| unknown protein [Arabidopsis
thaliana] gi|28059607|gb|AAO30074.1| unknown protein
[Arabidopsis thaliana]
Length = 350
Score = 164 bits (414), Expect = 8e-40
Identities = 80/119 (67%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Frame = -3
Query: 522 IALYQQLEKTHPCISIQRQAAELRYILQAPKLKISQEEMVTIPLIGSSYDSYAGTWSDKY 343
I LYQQLEK HP I+RQA+ELRYILQAPKLKISQEEMVTIP+IGSSYDSYA TWSDK
Sbjct: 232 IDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDSYAVTWSDKE 291
Query: 342 KDKDRK-SGPVTNQLPWSKDYLADFLVWKPPSGLEKNRALWIGLTIWLGLLGAAVFIQR 169
+DK+R+ + TNQL S D+L LVW+P G+EKNR W+ LT+W GL+GAA+ +QR
Sbjct: 292 RDKERRMNASTTNQLNSSDDFLGKLLVWRPVVGMEKNRVFWLALTLWFGLVGAALILQR 350
>pir||T09217 protein sam2B - spinach gi|2253092|emb|CAA74590.1| hypothetical
protein [Spinacia oleracea]
Length = 339
Score = 158 bits (400), Expect = 3e-38
Identities = 76/119 (63%), Positives = 94/119 (78%), Gaps = 1/119 (0%)
Frame = -3
Query: 522 IALYQQLEKTHPCISIQRQAAELRYILQAPKLKISQEEMVTIPLIGSSYDSYAGTWSDKY 343
IALY++LEK HP +SI+RQAAELRYIL+APK+KI+QEEMVTIPLIG+SYDSYA +W+DK
Sbjct: 221 IALYKKLEKGHPSVSIRRQAAELRYILEAPKIKITQEEMVTIPLIGNSYDSYASSWTDKS 280
Query: 342 KDKDRKSG-PVTNQLPWSKDYLADFLVWKPPSGLEKNRALWIGLTIWLGLLGAAVFIQR 169
KD ++ G TN P S+DY D L WKPP GLE NR W +T+ GL+GAA+F+QR
Sbjct: 281 KDSEQVIGSSTTNAFPSSRDYAGDLLKWKPPVGLENNRIFWAAVTLSFGLVGAALFLQR 339
>ref|NP_485289.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25530579|pir||AC1962
hypothetical protein alr1246 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130593|dbj|BAB73203.1|
ORF_ID:alr1246~hypothetical protein [Nostoc sp. PCC
7120]
Length = 173
Score = 46.2 bits (108), Expect = 2e-04
Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Frame = -3
Query: 522 IALYQQLEKTHPCISIQRQAAELRYILQAPKLKISQEEMVTIPLIGSSYDSYAGTWSDKY 343
IAL QQL + HP +QA L YILQAP+LK M IP +G+ D+ A T +
Sbjct: 67 IALCQQLRR-HPHSETSQQARRLLYILQAPRLKRPSNWMTEIPDLGALSDNEAKT---RV 122
Query: 342 KDKDRKSGPVTNQLPWSKDYLADFLVWKPPSGLEKNRALW-----IGLTI----WLG 199
K RK P + P +++ V + NR +W IGLTI WLG
Sbjct: 123 MAKPRK--PTEKKAPAEVEFVDLSQV-----NTKDNRFIWLALIVIGLTISYLVWLG 172
>gb|ZP_00111875.1| hypothetical protein [Nostoc punctiforme]
Length = 180
Score = 41.2 bits (95), Expect = 0.007
Identities = 23/43 (53%), Positives = 29/43 (66%)
Frame = -3
Query: 522 IALYQQLEKTHPCISIQRQAAELRYILQAPKLKISQEEMVTIP 394
IAL ++L K HP I I +QA ++ YIL+APKLK E M IP
Sbjct: 67 IALCERL-KRHPYIEISKQARQMVYILKAPKLKRPSEWMTEIP 108
>ref|NP_629131.1| putative phosphoenolpyruvate carboxykinase [Streptomyces coelicolor
A3(2)] gi|22095986|sp|Q93JL5|PPCK_STRCO
Phosphoenolpyruvate carboxykinase [GTP] (PEP
carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
gi|14285273|emb|CAC40592.1| putative phosphoenolpyruvate
carboxykinase [Streptomyces coelicolor A3(2)]
Length = 609
Score = 33.9 bits (76), Expect = 1.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 426 KISQEEMVTIPLIGSSYDSYAGTWSDKYKDKDRKSGPVTNQLPWSKDYLADFLVWKPPSG 247
++ ++ +P G + Y G W D KDKD+ P + W + A VW P
Sbjct: 461 ELRRDPFAMLPFCGYNMGDYMGHWVDVAKDKDQSKLPKIYYVNWFRKDDAGRFVW--PGF 518
Query: 246 LEKNRAL-WI 220
E R L WI
Sbjct: 519 GENGRVLKWI 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,958,755
Number of Sequences: 1393205
Number of extensions: 9670737
Number of successful extensions: 26414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26360
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
