Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003849A_C01 KMC003849A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 47 1e-04
gb|AAL82656.1|AC092387_4 putative gag-pol polyprotein [Oryza sat... 40 0.009
dbj|BAB17336.1| putative polyprotein [Oryza sativa (japonica cul... 38 0.047
gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa] 37 0.10
gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa] 36 0.23
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 46.6 bits (109), Expect = 1e-04
Identities = 22/45 (48%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Frame = -2
Query: 465 VPQLLIQWEGAAN--CTWELLSYIQDSFPQFALADKVTFDGEGNV 337
+ Q+L+QWE TWE + I+ S+P F L DKV F GEGNV
Sbjct: 1459 IEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNV 1503
>gb|AAL82656.1|AC092387_4 putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1|AC092172_7 Putative gag-pol
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1338
Score = 40.4 bits (93), Expect = 0.009
Identities = 20/46 (43%), Positives = 30/46 (64%), Gaps = 2/46 (4%)
Frame = -2
Query: 465 VPQLLIQWEG--AANCTWELLSYIQDSFPQFALADKVTFDGEGNVM 334
V QLL+QWEG A+ +WE L ++ +P F LAD++ +G +VM
Sbjct: 1266 VRQLLVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEGGRDVM 1311
>dbj|BAB17336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 38.1 bits (87), Expect = 0.047
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 465 VPQLLIQWEGA--ANCTWELLSYIQDSFPQFALADKVTFDGEGNVM 334
V QLLIQW+G A+ TWE +P F L D++ D G+VM
Sbjct: 1305 VRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDELALDEGGDVM 1350
>gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa]
Length = 1461
Score = 37.0 bits (84), Expect = 0.10
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -2
Query: 465 VPQLLIQWEG--AANCTWELLSYIQDSFPQFALADKVTFDGEGNVM 334
V Q+L+QW+G AA+ TWE +P L D++ DG G+VM
Sbjct: 1377 VRQVLVQWKGTSAASATWEDREPFFARYPALQLEDELPLDGGGDVM 1422
>gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa]
Length = 1476
Score = 35.8 bits (81), Expect = 0.23
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 2/46 (4%)
Frame = -2
Query: 465 VPQLLIQWEG--AANCTWELLSYIQDSFPQFALADKVTFDGEGNVM 334
V Q+L+ W+G AA+ TWE L ++ +P F L D++ + +VM
Sbjct: 1391 VRQVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALEEGRDVM 1436
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,031,526
Number of Sequences: 1393205
Number of extensions: 9950654
Number of successful extensions: 22145
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22088
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
