Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003845A_C01 KMC003845A_c01
(889 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF22526.1|AF123395_1 26S proteasome AAA-ATPase subunit RPT6a... 387 e-106
ref|NP_197500.1| 26S proteasome AAA-ATPase subunit RPT6a; protei... 387 e-106
ref|NP_568389.1| 26S proteasome AAA-ATPase subunit RPT6a; protei... 387 e-106
gb|AAF27916.1|AF220199_1 26S proteasome regulatory subunit 8 [Pi... 385 e-106
dbj|BAB17626.1| 26S proteasome regulatory particle triple-A ATPa... 385 e-106
>gb|AAF22526.1|AF123395_1 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis thaliana]
Length = 405
Score = 387 bits (994), Expect = e-106
Identities = 198/202 (98%), Positives = 200/202 (98%)
Frame = -3
Query: 887 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGX 708
HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG
Sbjct: 204 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 263
Query: 707 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 528
GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES
Sbjct: 264 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 323
Query: 527 RQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 348
R DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE
Sbjct: 324 RFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 383
Query: 347 MAVAKVMKKETEKNMSLRKLWK 282
MAVAKVMKK+TEKNMSLRKLWK
Sbjct: 384 MAVAKVMKKDTEKNMSLRKLWK 405
>ref|NP_197500.1| 26S proteasome AAA-ATPase subunit RPT6a; protein id: At5g20000.1,
supported by cDNA: 36085., supported by cDNA:
gi_14532681, supported by cDNA: gi_19310806 [Arabidopsis
thaliana] gi|14532682|gb|AAK64142.1| putative 26S
proteasome AAA-ATPase subunit RPT6a [Arabidopsis
thaliana] gi|19310807|gb|AAL85134.1| putative 26S
proteasome AAA-ATPase subunit RPT6a [Arabidopsis
thaliana] gi|21593097|gb|AAM65046.1| 26S proteasome
AAA-ATPase subunit RPT6a-like protein [Arabidopsis
thaliana]
Length = 419
Score = 387 bits (994), Expect = e-106
Identities = 198/202 (98%), Positives = 200/202 (98%)
Frame = -3
Query: 887 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGX 708
HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG
Sbjct: 218 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 277
Query: 707 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 528
GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES
Sbjct: 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 337
Query: 527 RQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 348
R DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE
Sbjct: 338 RFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 397
Query: 347 MAVAKVMKKETEKNMSLRKLWK 282
MAVAKVMKK+TEKNMSLRKLWK
Sbjct: 398 MAVAKVMKKDTEKNMSLRKLWK 419
>ref|NP_568389.1| 26S proteasome AAA-ATPase subunit RPT6a; protein id: At5g19990.1,
supported by cDNA: gi_13537114, supported by cDNA:
gi_17473853, supported by cDNA: gi_6652887 [Arabidopsis
thaliana] gi|13537115|dbj|BAB40755.1| AtSUG1
[Arabidopsis thaliana] gi|17473854|gb|AAL38350.1|
unknown protein [Arabidopsis thaliana]
Length = 419
Score = 387 bits (994), Expect = e-106
Identities = 198/202 (98%), Positives = 200/202 (98%)
Frame = -3
Query: 887 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGX 708
HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG
Sbjct: 218 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 277
Query: 707 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 528
GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES
Sbjct: 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 337
Query: 527 RQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 348
R DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE
Sbjct: 338 RFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 397
Query: 347 MAVAKVMKKETEKNMSLRKLWK 282
MAVAKVMKK+TEKNMSLRKLWK
Sbjct: 398 MAVAKVMKKDTEKNMSLRKLWK 419
>gb|AAF27916.1|AF220199_1 26S proteasome regulatory subunit 8 [Pinus taeda]
Length = 433
Score = 385 bits (989), Expect = e-106
Identities = 197/202 (97%), Positives = 200/202 (98%)
Frame = -3
Query: 887 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGX 708
HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG+G
Sbjct: 232 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGN 291
Query: 707 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 528
GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES
Sbjct: 292 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 351
Query: 527 RQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 348
R DILKIHSR+MNLMRGIDLKKIAEKM+GASGAELKAVCTEAGMFALRERRVHVTQEDFE
Sbjct: 352 RFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFE 411
Query: 347 MAVAKVMKKETEKNMSLRKLWK 282
MAVAKVMKKETEKNMSLRKLWK
Sbjct: 412 MAVAKVMKKETEKNMSLRKLWK 433
>dbj|BAB17626.1| 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza
sativa (japonica cultivar-group)]
gi|11991116|dbj|BAB19880.1| 26S proteasome ATPase
subunit Rpt6 [Oryza sativa]
Length = 424
Score = 385 bits (988), Expect = e-106
Identities = 196/202 (97%), Positives = 200/202 (98%)
Frame = -3
Query: 887 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGX 708
HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG+G
Sbjct: 223 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGN 282
Query: 707 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 528
GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE+S
Sbjct: 283 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDS 342
Query: 527 RQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 348
R DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE
Sbjct: 343 RFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFE 402
Query: 347 MAVAKVMKKETEKNMSLRKLWK 282
MAVAKVMKK+TEKNMSLRKLWK
Sbjct: 403 MAVAKVMKKDTEKNMSLRKLWK 424
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 757,464,834
Number of Sequences: 1393205
Number of extensions: 16894761
Number of successful extensions: 53165
Number of sequences better than 10.0: 1205
Number of HSP's better than 10.0 without gapping: 47308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51657
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48218255001
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
