Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003843A_C01 KMC003843A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD34548.1|AF141602_1 cystathionine-gamma-synthase precursor ... 154 6e-37
pir||S71228 O-succinylhomoserine (thiol)-lyase (EC 4.2.99.9) 1 -... 153 1e-36
pir||S51579 cystathionine gamma-lyase (EC 4.4.1.1) 1 - Arabidops... 153 1e-36
ref|NP_186761.1| putative cystathionine gamma-synthase; protein ... 153 1e-36
gb|AAC25687.1| cystathionine gamma-synthase precursor [Arabidops... 153 1e-36
>gb|AAD34548.1|AF141602_1 cystathionine-gamma-synthase precursor [Glycine max]
Length = 536
Score = 154 bits (389), Expect = 6e-37
Identities = 71/93 (76%), Positives = 84/93 (89%)
Frame = -1
Query: 537 RQMTGFGGVVCFDINGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPER 358
RQMTGFGGVV F+I+GD TTIKF+DSLKIPYIA SFGGCES+V+QPAI+SYWDLP+ ER
Sbjct: 444 RQMTGFGGVVSFEIDGDLHTTIKFIDSLKIPYIAASFGGCESIVDQPAILSYWDLPQSER 503
Query: 357 EKFRIYDHCVRFCFGVEDYEDLRDDVLQALDAI 259
K++IYD+ VRF FGVED+EDL+ DVLQAL+AI
Sbjct: 504 AKYKIYDNLVRFSFGVEDFEDLKADVLQALEAI 536
>pir||S71228 O-succinylhomoserine (thiol)-lyase (EC 4.2.99.9) 1 - Arabidopsis
thaliana
Length = 311
Score = 153 bits (387), Expect = 1e-36
Identities = 72/93 (77%), Positives = 84/93 (89%)
Frame = -1
Query: 537 RQMTGFGGVVCFDINGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPER 358
RQMTGFGGVV F+I+GD ETTIKFVDSLKIPYIAPSFGGCES+V+QPAIMSYWDLP+ ER
Sbjct: 219 RQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEER 278
Query: 357 EKFRIYDHCVRFCFGVEDYEDLRDDVLQALDAI 259
K+ I D+ VRF FGVED+ED++ D+LQAL+AI
Sbjct: 279 LKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 311
>pir||S51579 cystathionine gamma-lyase (EC 4.4.1.1) 1 - Arabidopsis thaliana
(fragment) gi|499166|emb|CAA56143.1| CYS1 [Arabidopsis
thaliana]
Length = 224
Score = 153 bits (387), Expect = 1e-36
Identities = 72/93 (77%), Positives = 84/93 (89%)
Frame = -1
Query: 537 RQMTGFGGVVCFDINGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPER 358
RQMTGFGGVV F+I+GD ETTIKFVDSLKIPYIAPSFGGCES+V+QPAIMSYWDLP+ ER
Sbjct: 132 RQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEER 191
Query: 357 EKFRIYDHCVRFCFGVEDYEDLRDDVLQALDAI 259
K+ I D+ VRF FGVED+ED++ D+LQAL+AI
Sbjct: 192 LKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 224
>ref|NP_186761.1| putative cystathionine gamma-synthase; protein id: At3g01120.1,
supported by cDNA: gi_1389725, supported by cDNA:
gi_1791308, supported by cDNA: gi_20259525, supported by
cDNA: gi_20453136 [Arabidopsis thaliana]
gi|21542422|sp|P55217|METB_ARATH Cystathionine
gamma-synthase, chloroplast precursor (CGS)
(O-succinylhomoserine (Thiol)-lyase)
gi|1791309|gb|AAB41235.1| cystathionine gamma-synthase
[Arabidopsis thaliana] gi|2852454|dbj|BAA24699.1|
cystathionine gamma-synthase [Arabidopsis thaliana]
gi|6714476|gb|AAF26162.1|AC008261_19 putative
cystathionine gamma-synthase [Arabidopsis thaliana]
gi|20453137|gb|AAM19810.1| AT3g01120/T4P13_19
[Arabidopsis thaliana] gi|27754257|gb|AAO22582.1|
putative cystathionine gamma-synthase [Arabidopsis
thaliana]
Length = 563
Score = 153 bits (387), Expect = 1e-36
Identities = 72/93 (77%), Positives = 84/93 (89%)
Frame = -1
Query: 537 RQMTGFGGVVCFDINGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPER 358
RQMTGFGGVV F+I+GD ETTIKFVDSLKIPYIAPSFGGCES+V+QPAIMSYWDLP+ ER
Sbjct: 471 RQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEER 530
Query: 357 EKFRIYDHCVRFCFGVEDYEDLRDDVLQALDAI 259
K+ I D+ VRF FGVED+ED++ D+LQAL+AI
Sbjct: 531 LKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563
>gb|AAC25687.1| cystathionine gamma-synthase precursor [Arabidopsis thaliana]
Length = 563
Score = 153 bits (387), Expect = 1e-36
Identities = 72/93 (77%), Positives = 84/93 (89%)
Frame = -1
Query: 537 RQMTGFGGVVCFDINGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPER 358
RQMTGFGGVV F+I+GD ETTIKFVDSLKIPYIAPSFGGCES+V+QPAIMSYWDLP+ ER
Sbjct: 471 RQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEER 530
Query: 357 EKFRIYDHCVRFCFGVEDYEDLRDDVLQALDAI 259
K+ I D+ VRF FGVED+ED++ D+LQAL+AI
Sbjct: 531 LKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,103,691
Number of Sequences: 1393205
Number of extensions: 10248707
Number of successful extensions: 35969
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 35013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35900
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
