Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003839A_C01 KMC003839A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567432.1| Expressed protein; protein id: At4g14465.1, sup... 50 2e-05
gb|AAM65129.1| putative DNA-binding protein [Arabidopsis thaliana] 50 2e-05
ref|NP_192942.1| putative DNA-binding protein; protein id: At4g1... 49 4e-05
ref|NP_177776.1| unknown protein; protein id: At1g76500.1 [Arabi... 45 5e-04
ref|NP_194012.1| putative DNA binding protein; protein id: At4g2... 45 6e-04
>ref|NP_567432.1| Expressed protein; protein id: At4g14465.1, supported by cDNA:
36844. [Arabidopsis thaliana]
gi|26452422|dbj|BAC43296.1| unknown protein [Arabidopsis
thaliana]
Length = 281
Score = 49.7 bits (117), Expect = 2e-05
Identities = 38/84 (45%), Positives = 48/84 (56%), Gaps = 3/84 (3%)
Frame = -3
Query: 560 ATFSHATYERLPLEEGDQEPGGCSPPPGMGQPPAGVSAGEAS-SAMAGYD-NLPPRLTLP 387
ATFS+ATYERLP+EE +++ GG G G P + + S MAG N+PP L +P
Sbjct: 204 ATFSNATYERLPMEE-EEDGGGSRQIHGGGDSPPRIGSNLPDLSGMAGPGYNMPPHL-IP 261
Query: 386 NGQ-QLNPDPAYSTWGHGHGRSPY 318
NG QL +P TW H R PY
Sbjct: 262 NGAGQLGHEP--YTW--VHARPPY 281
>gb|AAM65129.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 281
Score = 49.7 bits (117), Expect = 2e-05
Identities = 38/84 (45%), Positives = 48/84 (56%), Gaps = 3/84 (3%)
Frame = -3
Query: 560 ATFSHATYERLPLEEGDQEPGGCSPPPGMGQPPAGVSAGEAS-SAMAGYD-NLPPRLTLP 387
ATFS+ATYERLP+EE +++ GG G G P + + S MAG N+PP L +P
Sbjct: 204 ATFSNATYERLPMEE-EEDGGGSRQIHGGGDSPPRIGSNLPDLSGMAGPGYNMPPHL-IP 261
Query: 386 NGQ-QLNPDPAYSTWGHGHGRSPY 318
NG QL +P TW H R PY
Sbjct: 262 NGAGQLGHEP--YTW--VHARPPY 281
>ref|NP_192942.1| putative DNA-binding protein; protein id: At4g12050.1 [Arabidopsis
thaliana] gi|7485568|pir||T06612 hypothetical protein
F16J13.120 - Arabidopsis thaliana
gi|4586110|emb|CAB40946.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|7267906|emb|CAB78248.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 339
Score = 48.9 bits (115), Expect = 4e-05
Identities = 38/91 (41%), Positives = 46/91 (49%), Gaps = 10/91 (10%)
Frame = -3
Query: 560 ATFSHATYERLPLEEGDQEP------GGCSPPPGMGQPPAGVSAGEASSAMAGYDNLPPR 399
A+FS+A YERLPLEE + + GG GMG PP + +A +AMA LPP
Sbjct: 256 ASFSNAAYERLPLEEDEMQTPVQGGGGGGGGGGGMGSPPM-MGQQQAMAAMAAAQGLPPN 314
Query: 398 L----TLPNGQQLNPDPAYSTWGHGHGRSPY 318
L LP QQ N +ST GR PY
Sbjct: 315 LLGSVQLPPPQQ-NDQQYWST-----GRPPY 339
>ref|NP_177776.1| unknown protein; protein id: At1g76500.1 [Arabidopsis thaliana]
gi|25348243|pir||H96792 unknown protein F14G6.10
[imported] - Arabidopsis thaliana
gi|12323978|gb|AAG51949.1|AC015450_10 unknown protein;
41834-42742 [Arabidopsis thaliana]
Length = 302
Score = 45.4 bits (106), Expect = 5e-04
Identities = 30/92 (32%), Positives = 38/92 (40%), Gaps = 12/92 (13%)
Frame = -3
Query: 560 ATFSHATYERLPLEEGDQEPG------------GCSPPPGMGQPPAGVSAGEASSAMAGY 417
A+FS+AT+ERLPLE+ E G G PP PP+G G+ M+GY
Sbjct: 218 ASFSNATFERLPLEDEGGEGGEGGEVGEGGGGEGGPPPATSSSPPSGAGQGQLRGNMSGY 277
Query: 416 DNLPPRLTLPNGQQLNPDPAYSTWGHGHGRSP 321
D Q DP WG +P
Sbjct: 278 D------------QFAGDPHLLGWGAAAAAAP 297
>ref|NP_194012.1| putative DNA binding protein; protein id: At4g22810.1 [Arabidopsis
thaliana] gi|7486887|pir||T04576 hypothetical protein
T12H17.200 - Arabidopsis thaliana
gi|2827558|emb|CAA16566.1| putative DNA binding protein
[Arabidopsis thaliana] gi|7269128|emb|CAB79236.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 324
Score = 45.1 bits (105), Expect = 6e-04
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = -3
Query: 560 ATFSHATYERLPLEEGDQEP--------GGCSPPPGMGQPPAGVSAGEASSAMAGYDNLP 405
A+FS+A YERLPLEE + + G PP MGQ AM+G+ LP
Sbjct: 245 ASFSNAAYERLPLEEDEMQTPVHGGGGGGSLESPPMMGQ-----QLQHQQQAMSGHQGLP 299
Query: 404 PRLTLPNGQQLNPDPAYSTWGHGHGRSPY 318
P L QL S W GR PY
Sbjct: 300 PNLL--GSVQLQQQHDQSYW--STGRPPY 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,514,418
Number of Sequences: 1393205
Number of extensions: 13005582
Number of successful extensions: 55421
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 46338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54715
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
