Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003835A_C01 KMC003835A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175822.1| hypothetical protein; protein id: At1g54200.1 [... 58 4e-08
ref|NP_188014.1| hypothetical protein; protein id: At3g13980.1 [... 55 3e-07
ref|NP_189866.1| putative protein; protein id: At3g42800.1 [Arab... 48 5e-05
ref|NP_196766.1| putative serine rich protein; protein id: At5g1... 48 6e-05
gb|AAM65142.1| putative serine rich protein [Arabidopsis thaliana] 48 6e-05
>ref|NP_175822.1| hypothetical protein; protein id: At1g54200.1 [Arabidopsis
thaliana] gi|25372748|pir||C96583 hypothetical protein
F20D21.2 [imported] - Arabidopsis thaliana
gi|4585964|gb|AAD25600.1|AC005287_2 hypothetical protein
[Arabidopsis thaliana]
Length = 366
Score = 58.2 bits (139), Expect = 4e-08
Identities = 28/48 (58%), Positives = 36/48 (74%)
Frame = -3
Query: 429 EEHEEEDYDDAASYASSDLFELDHLAVLGNGLYDEELPVFETTHSSSN 286
E+ EE+D DDA S SSDLFELD+L+ +G Y EELPV+ETT ++N
Sbjct: 314 EDDEEDDDDDALSCTSSDLFELDNLSAIGIDRYREELPVYETTRLNTN 361
>ref|NP_188014.1| hypothetical protein; protein id: At3g13980.1 [Arabidopsis
thaliana] gi|11994369|dbj|BAB02328.1|
gb|AAD25600.1~gene_id:MDC16.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 357
Score = 55.5 bits (132), Expect = 3e-07
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3
Query: 420 EEEDYDDAASYASSDLFELDHLAVLGNGLYDEELPVFETT 301
EE+D DDAAS ASSDLFEL++L+ +G Y EELPV+ETT
Sbjct: 303 EEDDEDDAASCASSDLFELENLSAIGIERYREELPVYETT 342
>ref|NP_189866.1| putative protein; protein id: At3g42800.1 [Arabidopsis thaliana]
gi|11358169|pir||T47338 hypothetical protein T21C14.20 -
Arabidopsis thaliana gi|7543888|emb|CAB87197.1| putative
protein [Arabidopsis thaliana]
Length = 341
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/66 (37%), Positives = 42/66 (62%)
Frame = -3
Query: 471 VLKDLSLRKNANYSEEHEEEDYDDAASYASSDLFELDHLAVLGNGLYDEELPVFETTHSS 292
+ +++ L+ ++ +E+ +DA S++SSDLFELD + G G Y +ELPV+ETT
Sbjct: 272 ITRNIGLKDFVRSNKYEGKEEEEDAWSHSSSDLFELDSYRI-GMGRYLKELPVYETTDFK 330
Query: 291 SNPTLA 274
+N +A
Sbjct: 331 TNQAIA 336
>ref|NP_196766.1| putative serine rich protein; protein id: At5g12050.1, supported by
cDNA: 36958., supported by cDNA: gi_13877840, supported
by cDNA: gi_15983788, supported by cDNA: gi_16323505
[Arabidopsis thaliana] gi|11358674|pir||T48564 probable
serine rich protein - Arabidopsis thaliana
gi|7573372|emb|CAB87678.1| putative serine rich protein
[Arabidopsis thaliana]
gi|13877841|gb|AAK43998.1|AF370183_1 putative serine
rich protein [Arabidopsis thaliana]
gi|16323506|gb|AAL15247.1| putative serine rich protein
[Arabidopsis thaliana]
Length = 362
Score = 47.8 bits (112), Expect = 6e-05
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Frame = -3
Query: 438 NYSEEHEEEDYDDAASYASSDLFELDHLAVLGN----GLYDEELPVFETT 301
+Y ++ E++D DD AS +SSDLFELD ++GN +Y +ELPV+ETT
Sbjct: 310 DYEDDDEDDDDDDVASDSSSDLFELD---LVGNHHHHNVYGDELPVYETT 356
>gb|AAM65142.1| putative serine rich protein [Arabidopsis thaliana]
Length = 362
Score = 47.8 bits (112), Expect = 6e-05
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Frame = -3
Query: 438 NYSEEHEEEDYDDAASYASSDLFELDHLAVLGN----GLYDEELPVFETT 301
+Y ++ E++D DD AS +SSDLFELD ++GN +Y +ELPV+ETT
Sbjct: 310 DYEDDDEDDDDDDVASDSSSDLFELD---LVGNHHHHNVYGDELPVYETT 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,052,398
Number of Sequences: 1393205
Number of extensions: 7267162
Number of successful extensions: 21531
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21121
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
