Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003833A_C01 KMC003833A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181926.2| hypothetical protein; protein id: At2g43980.1, ... 60 4e-24
ref|NP_035740.1| tumor necrosis factor receptor superfamily, mem... 32 2.6
ref|NP_107044.1| hypothetical protein [Mesorhizobium loti] gi|14... 32 2.6
pir||I48854 gene murine tumour necrosis factor receptor 2 protei... 32 2.6
sp|P25119|TR1B_MOUSE Tumor necrosis factor receptor superfamily ... 32 2.6
>ref|NP_181926.2| hypothetical protein; protein id: At2g43980.1, supported by cDNA:
gi_17979419, supported by cDNA: gi_20465988 [Arabidopsis
thaliana] gi|17979420|gb|AAL49852.1| unknown protein
[Arabidopsis thaliana] gi|20465989|gb|AAM20216.1|
unknown protein [Arabidopsis thaliana]
Length = 488
Score = 59.7 bits (143), Expect(3) = 4e-24
Identities = 34/75 (45%), Positives = 47/75 (62%)
Frame = -3
Query: 468 KKSIPNADILMKLSNGDDLQPLLFDSLKSLPTADSVKDSGASTPGLTNDESIDIKLVTDA 289
KKSIP++ L K + + L+P+LFDSLKSLP DS + S ID++LVT+A
Sbjct: 373 KKSIPSSSSLRKSAEENGLKPILFDSLKSLP-VDSANQNPVS--------EIDLELVTEA 423
Query: 288 ANWLRRRLHLPVLWF 244
A WLR++L L + F
Sbjct: 424 ATWLRKKLDLTIFGF 438
Score = 59.7 bits (143), Expect(3) = 4e-24
Identities = 24/32 (75%), Positives = 31/32 (96%)
Frame = -2
Query: 205 LVDVNYLPSFKEVPDDISIPAFWEAISSKFDQ 110
+VD+NYLPSFKEVPD+I++PAFWEAI ++FDQ
Sbjct: 451 IVDLNYLPSFKEVPDNIAVPAFWEAIRNRFDQ 482
Score = 32.7 bits (73), Expect(3) = 4e-24
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 251 FGFDVVIQEGTHDHV 207
FGFDVVIQEGT DHV
Sbjct: 436 FGFDVVIQEGTGDHV 450
>ref|NP_035740.1| tumor necrosis factor receptor superfamily, member 1b; p75 TNFR;
TNF receptor beta chain [Mus musculus]
gi|3219683|emb|CAA74969.1| p80 TNF-alpha receptor [Mus
musculus]
Length = 482
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 296 VTSFISIDSSFVRPGVLAPESLTLSAVGRDFKLSNNRGWRSSPLD 430
+ S ++I + V APES TLSA+ R +S RS PLD
Sbjct: 193 ICSILAIPGNASTDAVCAPESPTLSAIPRTLYVSQPEPTRSQPLD 237
>ref|NP_107044.1| hypothetical protein [Mesorhizobium loti]
gi|14026232|dbj|BAB52830.1| hypothetical protein
[Mesorhizobium loti]
Length = 1562
Score = 32.3 bits (72), Expect = 2.6
Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Frame = +2
Query: 188 IVYINKLHDHEYLP-----ELQHQNQSTGRWSLLLSQFAASVTSFISIDSSFVRPGVLAP 352
+V ++ ++D +LP L+ S RW L+ FAA TS + D PG+
Sbjct: 1 MVGVDPVNDEFFLPPPGLTSLEPLEPSPTRW--LIKNFAAPRTSELQFD-----PGLGLD 53
Query: 353 ESLTLSAVGRDFKLSNNRG 409
E + + G +++SN RG
Sbjct: 54 EDMLVEIAGSQYRISNPRG 72
>pir||I48854 gene murine tumour necrosis factor receptor 2 protein - mouse
(fragment) gi|433831|emb|CAA53981.1| murine tumour
necrosis factor receptor 2 [Mus musculus]
Length = 459
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 296 VTSFISIDSSFVRPGVLAPESLTLSAVGRDFKLSNNRGWRSSPLD 430
+ S ++I + V APES TLSA+ R +S RS PLD
Sbjct: 171 ICSILAIPGNASTDAVCAPESPTLSAIPRTLYVSQPEPTRSQPLD 215
>sp|P25119|TR1B_MOUSE Tumor necrosis factor receptor superfamily member 1B precursor
(Tumor necrosis factor receptor 2) (TNF-R2) (p75)
gi|91863|pir||B38634 tumor necrosis factor receptor type
2 precursor - mouse gi|199828|gb|AAA39752.1| murine
tumor necrosis factor receptor 2
gi|202095|gb|AAA40463.1| tumor necrosis factor receptor
1 gi|12836165|dbj|BAB23533.1| unnamed protein product
[Mus musculus] gi|12836334|dbj|BAB23610.1| unnamed
protein product [Mus musculus]
Length = 474
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 296 VTSFISIDSSFVRPGVLAPESLTLSAVGRDFKLSNNRGWRSSPLD 430
+ S ++I + V APES TLSA+ R +S RS PLD
Sbjct: 186 ICSILAIPGNASTDAVCAPESPTLSAIPRTLYVSQPEPTRSQPLD 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,643,688
Number of Sequences: 1393205
Number of extensions: 7682961
Number of successful extensions: 18076
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18071
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
