Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003831A_C01 KMC003831A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200608.1| putative protein; protein id: At5g58000.1 [Arab... 112 4e-24
dbj|BAB08870.1| gb|AAD25584.1~gene_id:MTI20.26~similar to unknow... 102 3e-21
ref|NP_567809.1| expressed protein; protein id: At4g28430.1, sup... 62 7e-09
gb|AAM63049.1| unknown [Arabidopsis thaliana] 62 7e-09
pir||T04613 hypothetical protein F20O9.110 - Arabidopsis thalian... 62 7e-09
>ref|NP_200608.1| putative protein; protein id: At5g58000.1 [Arabidopsis thaliana]
Length = 1008
Score = 112 bits (279), Expect = 4e-24
Identities = 52/85 (61%), Positives = 63/85 (73%), Gaps = 1/85 (1%)
Frame = -1
Query: 574 KICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFV 395
KI SYS +AY NFW+RRFRDAW+SC HKKAVAL +F LVWNLSSV AR+WA F+L V
Sbjct: 475 KIFISYSTHFSAYGNFWMRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLV 534
Query: 394 AFRYYQQHYL-VRDECVEDEAECDE 323
AFRYYQ + D+ +DE + +E
Sbjct: 535 AFRYYQHKMIWTTDQADDDEDDNEE 559
>dbj|BAB08870.1| gb|AAD25584.1~gene_id:MTI20.26~similar to unknown protein
[Arabidopsis thaliana]
Length = 1065
Score = 102 bits (254), Expect = 3e-21
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = -1
Query: 547 LTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHY 368
L + NFW+RRFRDAW+SC HKKAVAL +F LVWNLSSV AR+WA F+L VAFRYYQ
Sbjct: 483 LAKFGNFWMRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKM 542
Query: 367 LVRDECVEDEAECDETWQEPVGVRQKQGRA 278
+ + +D+ + +E E +K+ RA
Sbjct: 543 IWTTDQADDDEDDNE---EEEAEEEKEQRA 569
>ref|NP_567809.1| expressed protein; protein id: At4g28430.1, supported by cDNA:
1885. [Arabidopsis thaliana]
Length = 457
Score = 61.6 bits (148), Expect = 7e-09
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = -1
Query: 574 KICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFV 395
K+ S Y++QL RRF +AW CTHKK VA WNL+S+ R AVF++ V
Sbjct: 336 KLYSCYASQLNQKVECAQRRFVEAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVV 395
Query: 394 AFRYYQQHYLVRDECVEDEAECDETWQE 311
RY +Q+ + E E++ + ++T E
Sbjct: 396 VIRYRRQNLQLDSEDEEEKKQQEKTHPE 423
>gb|AAM63049.1| unknown [Arabidopsis thaliana]
Length = 457
Score = 61.6 bits (148), Expect = 7e-09
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = -1
Query: 574 KICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFV 395
K+ S Y++QL RRF +AW CTHKK VA WNL+S+ R AVF++ V
Sbjct: 336 KLYSCYASQLNQKVECAQRRFVEAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVV 395
Query: 394 AFRYYQQHYLVRDECVEDEAECDETWQE 311
RY +Q+ + E E++ + ++T E
Sbjct: 396 VIRYRRQNLQLDSEDEEEKKQQEKTHPE 423
>pir||T04613 hypothetical protein F20O9.110 - Arabidopsis thaliana
gi|2842485|emb|CAA16882.1| hypothetical protein
[Arabidopsis thaliana] gi|7269697|emb|CAB79645.1|
hypothetical protein [Arabidopsis thaliana]
Length = 406
Score = 61.6 bits (148), Expect = 7e-09
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = -1
Query: 574 KICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFV 395
K+ S Y++QL RRF +AW CTHKK VA WNL+S+ R AVF++ V
Sbjct: 285 KLYSCYASQLNQKVECAQRRFVEAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVV 344
Query: 394 AFRYYQQHYLVRDECVEDEAECDETWQE 311
RY +Q+ + E E++ + ++T E
Sbjct: 345 VIRYRRQNLQLDSEDEEEKKQQEKTHPE 372
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,144,742
Number of Sequences: 1393205
Number of extensions: 11503428
Number of successful extensions: 39533
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 37607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39429
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
