Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003829A_C01 KMC003829A_c01
(890 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM01137.1|AC108884_19 Putative Transcription initiation fact... 161 1e-38
ref|NP_193766.1| putative protein; protein id: At4g20330.1, supp... 141 2e-32
ref|NP_193833.1| putative protein; protein id: At4g21010.1 [Arab... 106 4e-22
pir||T49705 related to transcription initiation factor IIE, beta... 38 0.18
emb|CAB91686.2| related to transcription initiation factor IIE, ... 38 0.18
>gb|AAM01137.1|AC108884_19 Putative Transcription initiation factor IIE, beta subunit [Oryza
sativa (japonica cultivar-group)]
Length = 279
Score = 161 bits (407), Expect = 1e-38
Identities = 76/96 (79%), Positives = 86/96 (89%)
Frame = -1
Query: 890 DSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAA 711
DSQEDI YPNDPK IKVDDDLKQLFR +ELPRDM+DIE++LQKNG+KP TNTAKRR+AA
Sbjct: 182 DSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAKRRAAA 241
Query: 710 QMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNL 603
Q+ G+ K KPKKK+ EIT+RTKLTNAHLPELFQNL
Sbjct: 242 QINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNL 277
>ref|NP_193766.1| putative protein; protein id: At4g20330.1, supported by cDNA:
gi_14326522, supported by cDNA: gi_18700217, supported
by cDNA: gi_20466493 [Arabidopsis thaliana]
gi|25407575|pir||G85230 hypothetical protein AT4g20330
[imported] - Arabidopsis thaliana
gi|5738378|emb|CAB52821.1| putative protein [Arabidopsis
thaliana] gi|7268828|emb|CAB79033.1| putative protein
[Arabidopsis thaliana]
gi|14326523|gb|AAK60306.1|AF385715_1 AT4g20330/F9F13_2
[Arabidopsis thaliana] gi|18700218|gb|AAL77719.1|
AT4g20330/F9F13_2 [Arabidopsis thaliana]
gi|20466494|gb|AAM20564.1| putative protein [Arabidopsis
thaliana]
Length = 286
Score = 141 bits (355), Expect = 2e-32
Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
Frame = -1
Query: 890 DSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAA 711
+SQEDIAYPND K IKVDD+ K LFR I +P DM+D+E++L K G+KPATNTA+RR+AA
Sbjct: 183 NSQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAERRAAA 242
Query: 710 QMQGISSKPK-PKKKKNEITKRTKLTNAHLPELFQNLKDS 594
Q GIS+KPK KKKK EI+KRTKLTNAHLPELFQNL S
Sbjct: 243 QTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQNLNGS 282
>ref|NP_193833.1| putative protein; protein id: At4g21010.1 [Arabidopsis thaliana]
gi|7486972|pir||T10643 hypothetical protein T13K14.170 -
Arabidopsis thaliana gi|5262791|emb|CAB45896.1| putative
protein [Arabidopsis thaliana]
gi|7268898|emb|CAB79101.1| putative protein [Arabidopsis
thaliana] gi|22136644|gb|AAM91641.1| unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 106 bits (265), Expect = 4e-22
Identities = 55/96 (57%), Positives = 75/96 (77%), Gaps = 1/96 (1%)
Frame = -1
Query: 890 DSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAA 711
DS+E Y N+ + P K+DD+LK LFR I +P DM+++E++L K G+KPATN A+RR+A
Sbjct: 182 DSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAERRAAE 239
Query: 710 QMQGISSKPK-PKKKKNEITKRTKLTNAHLPELFQN 606
Q+ G+S+KPK KKKK EIT RTKLTN+H+ ELFQ+
Sbjct: 240 QLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275
>pir||T49705 related to transcription initiation factor IIE, beta subunit
[imported] - Neurospora crassa
gi|28918641|gb|EAA28312.1| related to transcription
initiation factor IIE, beta subunit [MIPS] [Neurospora
crassa]
Length = 390
Score = 38.1 bits (87), Expect = 0.18
Identities = 24/86 (27%), Positives = 44/86 (50%)
Frame = -1
Query: 863 NDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMQGISSKP 684
+DP + +VD +LK +++ +E+P ++R L+ KPA+ + + A P
Sbjct: 307 DDPSLFHEVDPELKVMWQKVEVPGTDTIVQR-LKAASQKPASEDPRDKMTAA-------P 358
Query: 683 KPKKKKNEITKRTKLTNAHLPELFQN 606
K +KKK + K TN H+ L ++
Sbjct: 359 KAEKKKRAQRRTGKATNTHMEHLLKD 384
>emb|CAB91686.2| related to transcription initiation factor IIE, beta subunit
[Neurospora crassa]
Length = 302
Score = 38.1 bits (87), Expect = 0.18
Identities = 24/86 (27%), Positives = 44/86 (50%)
Frame = -1
Query: 863 NDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMQGISSKP 684
+DP + +VD +LK +++ +E+P ++R L+ KPA+ + + A P
Sbjct: 219 DDPSLFHEVDPELKVMWQKVEVPGTDTIVQR-LKAASQKPASEDPRDKMTAA-------P 270
Query: 683 KPKKKKNEITKRTKLTNAHLPELFQN 606
K +KKK + K TN H+ L ++
Sbjct: 271 KAEKKKRAQRRTGKATNTHMEHLLKD 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 779,206,813
Number of Sequences: 1393205
Number of extensions: 17595140
Number of successful extensions: 41775
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 39870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41662
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48496973238
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
