Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003827A_C01 KMC003827A_c01
(387 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_487511.1| unknown protein [Nostoc sp. PCC 7120] gi|255346... 31 3.3
gb|EAA36612.1| GLP_738_5601_7655 [Giardia lamblia ATCC 50803] 30 5.7
ref|ZP_00032070.1| hypothetical protein [Burkholderia fungorum] 30 5.7
gb|AAF05594.1|AF188719_1 alanyl-tRNA synthetase [Giardia intesti... 30 5.7
gb|EAA39461.1| GLP_26_224_1465 [Giardia lamblia ATCC 50803] 30 5.7
>ref|NP_487511.1| unknown protein [Nostoc sp. PCC 7120] gi|25534625|pir||AH2239
hypothetical protein alr3471 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132604|dbj|BAB75170.1|
ORF_ID:alr3471~unknown protein [Nostoc sp. PCC 7120]
Length = 721
Score = 31.2 bits (69), Expect = 3.3
Identities = 15/59 (25%), Positives = 32/59 (53%)
Frame = +2
Query: 149 KSHSRVWIHHEHIIQEYGEATFHSFST*VSDEALEPQNRNMLIDSAKIDQIFSKFLSSL 325
K H R +IHH ++E H+++ +S++ N L + ++I++I+S +S +
Sbjct: 345 KRHIRNYIHHSLGMEEVAIICIHAYAAFLSNQPQYSNVANKLWELSRIEEIYSLIVSEI 403
>gb|EAA36612.1| GLP_738_5601_7655 [Giardia lamblia ATCC 50803]
Length = 684
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/68 (23%), Positives = 34/68 (49%)
Frame = +2
Query: 155 HSRVWIHHEHIIQEYGEATFHSFST*VSDEALEPQNRNMLIDSAKIDQIFSKFLSSLLLK 334
+ ++ IH +++ G H + V+D ++ + +M IDSA+ DQ+ ++ ++
Sbjct: 594 NGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIH 653
Query: 335 A*PRSVYG 358
A V G
Sbjct: 654 ATANKVLG 661
>ref|ZP_00032070.1| hypothetical protein [Burkholderia fungorum]
Length = 387
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -3
Query: 385 NGNNGWSNLTIYTPGSSFQ*KRR 317
NGNNG N TIYT G S+ +R
Sbjct: 314 NGNNGAGNATIYTVGGSYNLSKR 336
>gb|AAF05594.1|AF188719_1 alanyl-tRNA synthetase [Giardia intestinalis]
Length = 969
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/68 (23%), Positives = 34/68 (49%)
Frame = +2
Query: 155 HSRVWIHHEHIIQEYGEATFHSFST*VSDEALEPQNRNMLIDSAKIDQIFSKFLSSLLLK 334
+ ++ IH +++ G H + V+D ++ + +M IDSA+ DQ+ ++ ++
Sbjct: 594 NGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIH 653
Query: 335 A*PRSVYG 358
A V G
Sbjct: 654 ATANKVLG 661
>gb|EAA39461.1| GLP_26_224_1465 [Giardia lamblia ATCC 50803]
Length = 413
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/68 (23%), Positives = 34/68 (49%)
Frame = +2
Query: 155 HSRVWIHHEHIIQEYGEATFHSFST*VSDEALEPQNRNMLIDSAKIDQIFSKFLSSLLLK 334
+ ++ IH +++ G H + V+D ++ + +M IDSA+ DQ+ ++ ++
Sbjct: 38 NGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIH 97
Query: 335 A*PRSVYG 358
A V G
Sbjct: 98 ATANKVLG 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,622,826
Number of Sequences: 1393205
Number of extensions: 5728000
Number of successful extensions: 10058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10056
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
