Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003825A_C01 KMC003825A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197834.1| unknown protein; protein id: At5g24460.1, suppo... 72 9e-17
pir||T00343 hypothetical protein KIAA0584 - human (fragment) gi|... 34 1.1
gb|EAA05055.1| agCP7099 [Anopheles gambiae str. PEST] 34 1.5
ref|NP_595266.1| hypothetical protein [Schizosaccharomyces pombe... 33 3.3
gb|EAA39302.1| GLP_532_33764_32247 [Giardia lamblia ATCC 50803] 33 3.3
>ref|NP_197834.1| unknown protein; protein id: At5g24460.1, supported by cDNA:
gi_17065179, supported by cDNA: gi_20259931 [Arabidopsis
thaliana] gi|9758534|dbj|BAB08929.1|
gene_id:T31K7.4~unknown protein [Arabidopsis thaliana]
gi|17065180|gb|AAL32744.1| Unknown protein [Arabidopsis
thaliana] gi|20259932|gb|AAM13313.1| unknown protein
[Arabidopsis thaliana]
Length = 300
Score = 71.6 bits (174), Expect(2) = 9e-17
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = -1
Query: 544 GDGIEVGDIVTIDPNSYEMRVEVRCSGSYPGLPGCYVLHTLNATVEGLPEGDFCT 380
GDG +G + I P +Y RVE R S SYPGLP Y LH++NATVEGLPE DFCT
Sbjct: 205 GDGDNIGQRIKILPGTYNRRVEERNSLSYPGLPARYALHSVNATVEGLPEQDFCT 259
Score = 36.6 bits (83), Expect(2) = 9e-17
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = -2
Query: 366 EYSGFDDKK------VANQAVYVRKHYWTWVSADSI 277
EY G D K A AV V++HYW WVS DSI
Sbjct: 263 EYEGGDSTKDSVETLAAGNAVTVKRHYWKWVSPDSI 298
>pir||T00343 hypothetical protein KIAA0584 - human (fragment)
gi|3043692|dbj|BAA25510.1| KIAA0584 protein [Homo
sapiens]
Length = 738
Score = 34.3 bits (77), Expect = 1.1
Identities = 19/42 (45%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 RCKNHPPANPR-PWHSTCAERSNRANPGTSRNTVPPPSSHTN 501
R K HPPA PR P R + A PG T PPP+S N
Sbjct: 71 RGKPHPPAAPRSPLLPGSRRRPHAAQPGARARTSPPPASARN 112
>gb|EAA05055.1| agCP7099 [Anopheles gambiae str. PEST]
Length = 372
Score = 33.9 bits (76), Expect = 1.5
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +1
Query: 394 PPANPRPWHSTCAERSNRANPGTSRNTVPPPSSHTNSGQSS 516
PP+N P+H+T + S+ ++PG+ +PPPSS+ ++G S+
Sbjct: 116 PPSNHPPYHTTTST-SSMSSPGS----MPPPSSYPSAGSSN 151
>ref|NP_595266.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491759|pir||T40772 hypothetical protein SPBC947.10 -
fission yeast (Schizosaccharomyces pombe)
gi|2894297|emb|CAA17038.1| zinc finger protein; zf-C3HC4
type (RING finger); 7 predicted transmembrane helices;
similar to S. cerevisiae YKL034W [Schizosaccharomyces
pombe]
Length = 676
Score = 32.7 bits (73), Expect = 3.3
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 364 LIKRHRCKNHPPANPRPWHSTCAERSNRANPGTSRNTVPPPSSHTNSGQSSLYHPPQFHR 543
LI R + N PP PRP + + + + ++ N+ PS+ ++ +++ +PPQ
Sbjct: 389 LILRVQNSNMPPPAPRPVTNNSSNNNTNQSNASNENSPNAPSAANDNTETTTVNPPQEDD 448
Query: 544 LPRPRSRR 567
P + R
Sbjct: 449 QPMTQHER 456
>gb|EAA39302.1| GLP_532_33764_32247 [Giardia lamblia ATCC 50803]
Length = 505
Score = 32.7 bits (73), Expect = 3.3
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 3/53 (5%)
Frame = +2
Query: 347 SSKPEYSS-SVIGAKITLRQTLDRGIQRVQNV--ATGQTRVRAGTPYLHPHLI 496
S KP S S + A I T +G + +Q++ A G+ V+A P+LHPHLI
Sbjct: 188 SQKPGIPSPSFLAANIVSMYTTKQGSKNLQSLLSAHGKAAVQAILPHLHPHLI 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,653,742
Number of Sequences: 1393205
Number of extensions: 13109087
Number of successful extensions: 46806
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 37353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46051
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
