Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003820A_C01 KMC003820A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196524.1| putative protein; protein id: At5g09620.1 [Arab... 195 3e-49
ref|NP_201248.1| putative protein; protein id: At5g64430.1, supp... 190 1e-47
ref|NP_565256.1| expressed protein; protein id: At2g01190.1, sup... 110 9e-24
gb|AAM62991.1| unknown [Arabidopsis thaliana] 108 4e-23
ref|NP_567290.1| putative protein; protein id: At4g05150.1, supp... 92 5e-18
>ref|NP_196524.1| putative protein; protein id: At5g09620.1 [Arabidopsis thaliana]
gi|11357503|pir||T49936 hypothetical protein F17I14.190
- Arabidopsis thaliana gi|7671427|emb|CAB89368.1|
putative protein [Arabidopsis thaliana]
gi|9758990|dbj|BAB09517.1|
gb|AAD14519.1~gene_id:MTH16.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 531
Score = 195 bits (495), Expect = 3e-49
Identities = 106/189 (56%), Positives = 126/189 (66%), Gaps = 23/189 (12%)
Frame = +1
Query: 49 SYPDSGDSSPRSREIDFENPTPWEDQQSPHNYKAKFLCSYGGKIQPRTHDNQLSYVGGGQ 228
SYPDS +SSPRSR+++FENP+PWEDQQ NYK K +CSYGGKIQPR HDNQL+YV G
Sbjct: 8 SYPDSAESSPRSRDVEFENPSPWEDQQQ-QNYKVKLMCSYGGKIQPRPHDNQLTYVNGDT 66
Query: 229 PRSSPSTGTPSVPTCLSKLAALCDAAPQ--ELTFKYQLPGEDLDALISVTNDDDLEHLMH 402
S G P +SKL+A+C E++FKYQLPGEDLDALISVTND+DLEH+MH
Sbjct: 67 KIMSVDRGI-RFPALVSKLSAVCSGGGDGGEISFKYQLPGEDLDALISVTNDEDLEHMMH 125
Query: 403 EYDRLYRPASKPVRMRLFLF-SAPNPG----------------PLSQQPDPLK----PQP 519
EYDRL R ++KP RMRLFLF S+P G P+ +P+ K P
Sbjct: 126 EYDRLLRLSTKPARMRLFLFPSSPISGGFGSEGSTKSDRDTLNPIPSRPESEKSVTAPPN 185
Query: 520 NVDFLFGLE 546
N DFLFG E
Sbjct: 186 NADFLFGSE 194
>ref|NP_201248.1| putative protein; protein id: At5g64430.1, supported by cDNA:
gi_17064915, supported by cDNA: gi_20259929, supported
by cDNA: gi_20260125 [Arabidopsis thaliana]
gi|10178224|dbj|BAB11604.1| contains similarity to
unknown protein~gb|AAD14519.1~gene_id:T12B11.2
[Arabidopsis thaliana] gi|17064916|gb|AAL32612.1|
Unknown protein [Arabidopsis thaliana]
gi|20259930|gb|AAM13312.1| unknown protein [Arabidopsis
thaliana] gi|20260126|gb|AAM12961.1| unknown protein
[Arabidopsis thaliana]
Length = 513
Score = 190 bits (482), Expect = 1e-47
Identities = 109/203 (53%), Positives = 124/203 (60%), Gaps = 29/203 (14%)
Frame = +1
Query: 25 VENYQYPASYPDSGDSSPRSREIDFENPTP-WEDQ---QSPHNYKAKFLCSYGGKIQPRT 192
+E + Y SYPDS DSSPRSREI+F+NP P W+DQ Q H+YK KF+CSYGGKIQPR
Sbjct: 1 MEKFSYN-SYPDSTDSSPRSREIEFDNPPPPWDDQNQNQQQHSYKVKFMCSYGGKIQPRP 59
Query: 193 HDNQLSYVGGGQPRSSPSTGTPSVPTCLSKLAALC---DAAPQELTFKYQLPGEDLDALI 363
HDNQL+YV G S G P SKL+ +C D E+TFKYQLPGEDLDALI
Sbjct: 60 HDNQLTYVNGETKILSVDRGI-RFPVLASKLSTVCGGGDGGGGEVTFKYQLPGEDLDALI 118
Query: 364 SVTNDDDLEHLMHEYDRLYRPASKPVRMRLFLFSAPN----------------------P 477
SVTNDDDLEH+MHEYDRL R +SKP RMRLFLF A + P
Sbjct: 119 SVTNDDDLEHMMHEYDRLLRLSSKPARMRLFLFPASSGFGSQSSTQSDRDRFVEALNTVP 178
Query: 478 GPLSQQPDPLKPQPNVDFLFGLE 546
+ P N DFLFG E
Sbjct: 179 RLSESEKSVTAPPNNADFLFGSE 201
>ref|NP_565256.1| expressed protein; protein id: At2g01190.1, supported by cDNA:
17996., supported by cDNA: gi_17979118 [Arabidopsis
thaliana] gi|17979119|gb|AAL49817.1| unknown protein
[Arabidopsis thaliana] gi|20197587|gb|AAD14519.2|
expressed protein [Arabidopsis thaliana]
gi|21436179|gb|AAM51377.1| unknown protein [Arabidopsis
thaliana]
Length = 720
Score = 110 bits (276), Expect = 9e-24
Identities = 67/155 (43%), Positives = 93/155 (59%), Gaps = 14/155 (9%)
Frame = +1
Query: 46 ASYPDSGDSSPRSREIDFENPTPWEDQQSPH-----------NYKAKFLCSYGGKIQPRT 192
+SYP+S DSSPRSR D W+D +P + K +F+CSYGG I PR
Sbjct: 35 SSYPESLDSSPRSRTTD-----GWDDLPAPSGGGGGGGGSAVSSKLRFMCSYGGHILPRP 89
Query: 193 HDNQLSYVGGGQPRSSPSTGTPSVPTCLSKLA-ALCDAAPQELTFKYQLPGEDLDALISV 369
HD L Y+GG R S+P+ +++L+ L D + T KYQLP EDLD+LISV
Sbjct: 90 HDKSLCYMGG-DTRIVVVDRNSSLPSLIARLSNTLLDG--RSFTLKYQLPSEDLDSLISV 146
Query: 370 TNDDDLEHLMHEYDRLYRP--ASKPVRMRLFLFSA 468
T D+DL++++ EYDR ++KP R+RLFLF++
Sbjct: 147 TTDEDLDNMIEEYDRTISASNSTKPSRLRLFLFTS 181
>gb|AAM62991.1| unknown [Arabidopsis thaliana]
Length = 720
Score = 108 bits (270), Expect = 4e-23
Identities = 66/155 (42%), Positives = 92/155 (58%), Gaps = 14/155 (9%)
Frame = +1
Query: 46 ASYPDSGDSSPRSREIDFENPTPWEDQQSPH-----------NYKAKFLCSYGGKIQPRT 192
+SYP+S DSSPRSR D W+D +P + K + +CSYGG I PR
Sbjct: 35 SSYPESLDSSPRSRTTD-----GWDDLPAPSGGGGGGGGSAVSSKLRLMCSYGGHILPRP 89
Query: 193 HDNQLSYVGGGQPRSSPSTGTPSVPTCLSKLA-ALCDAAPQELTFKYQLPGEDLDALISV 369
HD L Y+GG R S+P+ +++L+ L D + T KYQLP EDLD+LISV
Sbjct: 90 HDKSLCYMGG-DTRIVVVDRNSSLPSLIARLSNTLLDG--RSFTLKYQLPSEDLDSLISV 146
Query: 370 TNDDDLEHLMHEYDRLYRP--ASKPVRMRLFLFSA 468
T D+DL++++ EYDR ++KP R+RLFLF++
Sbjct: 147 TTDEDLDNMIEEYDRTISASNSTKPSRLRLFLFTS 181
>ref|NP_567290.1| putative protein; protein id: At4g05150.1, supported by cDNA:
gi_15809939 [Arabidopsis thaliana]
gi|15809940|gb|AAL06897.1| AT4g05150/C17L7_70
[Arabidopsis thaliana]
Length = 477
Score = 91.7 bits (226), Expect = 5e-18
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Frame = +1
Query: 58 DSGDSSPRSREIDFENPTPWEDQQSPHNYKAKFLCSYGGKIQPRTHDNQLSYVGGGQPRS 237
DS SSPRS E P + +F+C++GG+I PR DNQL YVGG
Sbjct: 43 DSLASSPRS-----------EYDSQP---RVRFMCTFGGRILPRPPDNQLCYVGGDNRMV 88
Query: 238 SPSTGTPSVPTCLSKLAALCDAAPQELTFKYQLPGEDLDALISVTNDDDLEHLMHEYDRL 417
+ T + + LSKLA L + ++ KYQLP EDLDALISV+ D+D+E++M EYDR+
Sbjct: 89 AVHRHT-TFASLLSKLAKL--SGKSNISVKYQLPNEDLDALISVSTDEDVENMMDEYDRV 145
Query: 418 YRPAS-KPVRMRLFLFS 465
+ + + R+RLFLF+
Sbjct: 146 AQNQNPRASRLRLFLFT 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,951,036
Number of Sequences: 1393205
Number of extensions: 14297277
Number of successful extensions: 111119
Number of sequences better than 10.0: 4231
Number of HSP's better than 10.0 without gapping: 68258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97699
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
