Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003814A_C01 KMC003814A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563963.1| expressed protein; protein id: At1g15140.1, sup... 221 6e-57
sp|P43394|K502_ACTCH FRUIT PROTEIN PKIWI502 gi|1085869|pir||S480... 152 4e-36
ref|ZP_00029283.1| hypothetical protein [Burkholderia fungorum] 62 4e-09
ref|ZP_00028231.1| hypothetical protein [Burkholderia fungorum] 61 1e-08
gb|ZP_00025102.1| hypothetical protein [Ralstonia metallidurans] 60 1e-08
>ref|NP_563963.1| expressed protein; protein id: At1g15140.1, supported by cDNA:
gi_12744998, supported by cDNA: gi_15451091, supported
by cDNA: gi_18377447 [Arabidopsis thaliana]
gi|25513496|pir||C86285 probable oxidoreductase F9L1.8 -
Arabidopsis thaliana gi|5103813|gb|AAD39643.1|AC007591_8
Contains a PF|00175 Oxidoreductase FAD/NADH-binding
domain. ESTs gb|H76345 and gb|AA651465 come from this
gene. [Arabidopsis thaliana]
gi|12744999|gb|AAK06879.1|AF344328_1 unknown protein
[Arabidopsis thaliana] gi|15451092|gb|AAK96817.1|
Unknown protein [Arabidopsis thaliana]
gi|18377448|gb|AAL66890.1| unknown protein [Arabidopsis
thaliana]
Length = 295
Score = 221 bits (562), Expect = 6e-57
Identities = 103/132 (78%), Positives = 122/132 (92%)
Frame = -3
Query: 558 IDPPEKFGTVIVFATGSGISPIRSLIESGFSADKRSDVRVYYGARNLQRMAYQDKFKQWE 379
IDPPE++ TV++FATGSGISPIRSLIESGF AD+RSDVR+YYGARNL RMAYQ+KFK+WE
Sbjct: 164 IDPPEEYPTVLIFATGSGISPIRSLIESGFGADRRSDVRLYYGARNLNRMAYQEKFKEWE 223
Query: 378 SSGVKIVPVLSQPEDSWTGESGYVQAAFTRAKEISNPLSTGAVLCGQKQMTEEVTSILVA 199
S+GVK+VPVLSQP+D W GE+GYVQAAF RAK++S P +TGAVLCGQKQM EE+TS+LVA
Sbjct: 224 SAGVKVVPVLSQPDDGWKGETGYVQAAFARAKQLSAPKATGAVLCGQKQMAEEITSMLVA 283
Query: 198 DGVSAEKILKNF 163
DGVS +K+LKNF
Sbjct: 284 DGVSNDKLLKNF 295
>sp|P43394|K502_ACTCH FRUIT PROTEIN PKIWI502 gi|1085869|pir||S48036 hypothetical protein
- kiwi fruit gi|450237|gb|AAA53070.1| pKIWI502
Length = 317
Score = 152 bits (383), Expect = 4e-36
Identities = 72/127 (56%), Positives = 92/127 (71%)
Frame = -3
Query: 552 PPEKFGTVIVFATGSGISPIRSLIESGFSADKRSDVRVYYGARNLQRMAYQDKFKQWESS 373
PPE + TV++ TG G+S RS IE GF A+KRSDVR+YYGA NL+ M YQ++FK WE+S
Sbjct: 187 PPEDYPTVLISVTGYGMSAGRSFIEEGFGANKRSDVRLYYGAENLETMGYQERFKDWEAS 246
Query: 372 GVKIVPVLSQPEDSWTGESGYVQAAFTRAKEISNPLSTGAVLCGQKQMTEEVTSILVADG 193
GV+++PVLS+P +W G GYVQ + + K I++P +TGAVL G M EE ILVA G
Sbjct: 247 GVRVIPVLSRPPPNWNGAVGYVQDVYLKDKPIADPRTTGAVLIGNPNMVEETRGILVAQG 306
Query: 192 VSAEKIL 172
VS EKIL
Sbjct: 307 VSREKIL 313
>ref|ZP_00029283.1| hypothetical protein [Burkholderia fungorum]
Length = 341
Score = 62.4 bits (150), Expect = 4e-09
Identities = 35/122 (28%), Positives = 61/122 (49%), Gaps = 2/122 (1%)
Frame = -3
Query: 546 EKFGTVIVFATGSGISPIRSLIESGFSADKRSDVRVYYGARNLQRMAYQDKFKQWESS-- 373
E + +++ ATG+G++P+++++ES V +Y+GAR + D+ +QW +
Sbjct: 199 EDYRPLLMVATGTGLAPVKAILESLMDDPDCPPVWLYWGARTEADLYLHDEIQQWGARLY 258
Query: 372 GVKIVPVLSQPEDSWTGESGYVQAAFTRAKEISNPLSTGAVLCGQKQMTEEVTSILVADG 193
+ VPVLS+P W G GYVQ A ++ ++ LCG M + + G
Sbjct: 259 EFQYVPVLSRPGSEWAGRQGYVQHAV--CEDFADLSEYAVYLCGSPTMINDARRHFLEKG 316
Query: 192 VS 187
S
Sbjct: 317 AS 318
>ref|ZP_00028231.1| hypothetical protein [Burkholderia fungorum]
Length = 345
Score = 60.8 bits (146), Expect = 1e-08
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = -3
Query: 531 VIVFATGSGISPIRSLIESGFSADKRSDVRVYYGARNLQRMAYQDKFKQWESSG-VKIVP 355
VI+ ATG+G +P++S++E + +Y+GAR + + + ++W SG +K VP
Sbjct: 213 VILLATGTGFAPVKSIVEDAIKRRLDRPLTLYWGARRAEDLYLAELAQKWHDSGKLKFVP 272
Query: 354 VLSQPEDSWTGESGYVQAAFTRAKEISNPLSTGAVLCGQKQMT 226
VLS+P W G G+V T ++ + CG MT
Sbjct: 273 VLSEPNADWNGRRGFVHE--TVLEDFGSLDGYQVYACGNPAMT 313
>gb|ZP_00025102.1| hypothetical protein [Ralstonia metallidurans]
Length = 369
Score = 60.5 bits (145), Expect = 1e-08
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Frame = -3
Query: 546 EKFGTVIVFATGSGISPIRSLIESGFSADKRSDVRVYYGARNLQRMAYQDKFKQWESS-- 373
E + +++ ATG+G++PI+S++E+ V +Y+G R+ + D+ +W
Sbjct: 234 EDYRPLLMVATGTGLAPIKSMLEALMDDPDCPPVWLYWGMRSAADLYLHDEIARWGERLY 293
Query: 372 GVKIVPVLSQPEDSWTGESGYVQAAFTRAKEISNPLSTGAVLCGQKQMTEEVTSILVADG 193
+ VPVLS+ +D+W G GYV A A +I + LCG M + + G
Sbjct: 294 DFQYVPVLSRADDTWQGRRGYVHDAV--AADIGDLSEHAIYLCGSPNMIHDAKQTFMVLG 351
Query: 192 VSA 184
A
Sbjct: 352 AQA 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,227,253
Number of Sequences: 1393205
Number of extensions: 10224842
Number of successful extensions: 28579
Number of sequences better than 10.0: 337
Number of HSP's better than 10.0 without gapping: 27871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28502
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
