Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003813A_C01 KMC003813A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_740910.1| Putative nuclear protein family member, with a ... 35 1.2
gb|AAD26867.1|AC007230_1 T23K8.1 [Arabidopsis thaliana] 33 3.5
gb|AAO22649.1| unknown protein [Arabidopsis thaliana] 33 3.5
emb|CAB75858.1| high mobility group HMG-14 [Xenopus laevis] 33 4.5
ref|XP_194614.1| similar to Tho2 [Homo sapiens] [Mus musculus] 33 4.5
>ref|NP_740910.1| Putative nuclear protein family member, with a coiled coil-4
domain, nematode specific [Caenorhabditis elegans]
gi|7494901|pir||T18726 hypothetical protein B03797.7.1 -
Caenorhabditis elegans gi|5824364|emb|CAB54186.1|
Hypothetical protein B0379.7 [Caenorhabditis elegans]
Length = 409
Score = 34.7 bits (78), Expect = 1.2
Identities = 20/53 (37%), Positives = 31/53 (57%)
Frame = -1
Query: 628 RPALDSGNRRSGRNSEKPSKQEASKDKGMVRRQGKKSDVKVPVSTPKGNKENK 470
R A+DSG S ++S P+ E+ K K + +++ KKS K S + NK+NK
Sbjct: 190 RLAVDSGPASSDQSSSAPASTESKKSKKIKKKKNKKSKDK-KKSNSRKNKKNK 241
>gb|AAD26867.1|AC007230_1 T23K8.1 [Arabidopsis thaliana]
Length = 309
Score = 33.1 bits (74), Expect = 3.5
Identities = 21/68 (30%), Positives = 35/68 (50%)
Frame = -1
Query: 646 TNSXTPRPALDSGNRRSGRNSEKPSKQEASKDKGMVRRQGKKSDVKVPVSTPKGNKENK* 467
T+ T + SGN +S E+P K+EA + RR+G+ K+ ST K ++E
Sbjct: 154 TSERTLQDDKKSGNAKSEEVQEQPEKREAPE----TRREGETGATKIETSTGKDDEE--- 206
Query: 466 DVQTNEEV 443
+ +NE +
Sbjct: 207 -ISSNEPI 213
>gb|AAO22649.1| unknown protein [Arabidopsis thaliana]
Length = 246
Score = 33.1 bits (74), Expect = 3.5
Identities = 21/68 (30%), Positives = 35/68 (50%)
Frame = -1
Query: 646 TNSXTPRPALDSGNRRSGRNSEKPSKQEASKDKGMVRRQGKKSDVKVPVSTPKGNKENK* 467
T+ T + SGN +S E+P K+EA + RR+G+ K+ ST K ++E
Sbjct: 158 TSERTLQDDKKSGNAKSEEVQEQPEKREAPE----TRREGETGATKIETSTGKDDEE--- 210
Query: 466 DVQTNEEV 443
+ +NE +
Sbjct: 211 -ISSNEPI 217
>emb|CAB75858.1| high mobility group HMG-14 [Xenopus laevis]
Length = 106
Score = 32.7 bits (73), Expect = 4.5
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 4/65 (6%)
Frame = -1
Query: 622 ALDSGNRRSGRNSEKPS----KQEASKDKGMVRRQGKKSDVKVPVSTPKGNKENK*DVQT 455
A D RRS R S KP+ + + K+K V+ + ++ + KVP KG K + +
Sbjct: 14 AKDEPKRRSARLSSKPTPAKTEPKPKKEKAPVKEKPEEKEKKVPAKGKKGAKGKQTEEAN 73
Query: 454 NEEVS 440
EE +
Sbjct: 74 KEEAN 78
>ref|XP_194614.1| similar to Tho2 [Homo sapiens] [Mus musculus]
Length = 259
Score = 32.7 bits (73), Expect = 4.5
Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Frame = -1
Query: 643 NSXTPRPALDSGNRRSGRNSEKPSKQEASKDKGMVRRQGKKSDVKVPVSTP------KGN 482
+S TP+ +GN SG NS K K+ DK V+ + K+ K P +TP K +
Sbjct: 66 SSTTPKGNSSNGN--SGSNSNKAVKEN---DKEKVKEKEKEKKEKTPATTPEARALGKDS 120
Query: 481 KENK*DVQTNEE 446
KE + + N+E
Sbjct: 121 KEKPKEERPNKE 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,143,070
Number of Sequences: 1393205
Number of extensions: 10983110
Number of successful extensions: 26920
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 25904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26864
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
