Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003812A_C01 KMC003812A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19664|LEC_LOTTE ANTI-H(O) LECTIN (LTA) 209 2e-53
pir||S11056 lectin - winged pea 206 1e-52
dbj|BAA36416.1| lectin-related polypeptide [Robinia pseudoacacia] 183 3e-46
gb|AAA80183.1| lectin 167 1e-40
sp|Q41160|LCB3_ROBPS PUTATIVE BARK AGGLUTININ LECRPA3 PRECURSOR 167 1e-40
>sp|P19664|LEC_LOTTE ANTI-H(O) LECTIN (LTA)
Length = 240
Score = 209 bits (532), Expect = 2e-53
Identities = 114/172 (66%), Positives = 132/172 (76%), Gaps = 10/172 (5%)
Frame = +3
Query: 111 VSFNFTKFTDDGSLILQGDAKIWTDGRLALPSDPLIG--KTT---SRVLYATPVPIWDST 275
VSFN+T+F DDGSLILQGDAKIWTDGRLA+P+DPL+ KTT R LYATPVPIWDS
Sbjct: 1 VSFNYTEFKDDGSLILQGDAKIWTDGRLAMPTDPLVNNPKTTRSAGRALYATPVPIWDSA 60
Query: 276 TGSVASFVSSFSF--VVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEENGYNQ 449
TG+VASFV+SF+F V+ ++ Y +DGLVFFLAP GT IP S G LGI D NG+NQ
Sbjct: 61 TGNVASFVTSFNFLFVIRELK-YTPTDGLVFFLAPVGTEIPSGSTGGFLGIFDGSNGFNQ 119
Query: 450 FVAVEFDSYNNTRDP---TFRHIGIDVNSVMSMNLVKRNRVSGALEKAFIIY 596
FVAVEFDSY+N DP H+GIDVNS+MS+ V NRVSG+LEKA IIY
Sbjct: 120 FVAVEFDSYHNIWDPKSLRSSHVGIDVNSIMSLKAVNWNRVSGSLEKATIIY 171
>pir||S11056 lectin - winged pea
Length = 240
Score = 206 bits (525), Expect = 1e-52
Identities = 113/172 (65%), Positives = 131/172 (75%), Gaps = 10/172 (5%)
Frame = +3
Query: 111 VSFNFTKFTDDGSLILQGDAKIWTDGRLALPSDPLIG--KTT---SRVLYATPVPIWDST 275
VSF +T+F DDGSLILQGDAKIWTDGRLA+P+DPL+ KTT R LYATPVPIWDS
Sbjct: 1 VSFXYTEFKDDGSLILQGDAKIWTDGRLAMPTDPLVNNPKTTRSAGRALYATPVPIWDSA 60
Query: 276 TGSVASFVSSFSF--VVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEENGYNQ 449
TG+VASFV+SF+F V+ ++ Y +DGLVFFLAP GT IP S G LGI D NG+NQ
Sbjct: 61 TGNVASFVTSFNFLFVIRELK-YTPTDGLVFFLAPVGTEIPSGSTGGFLGIFDGSNGFNQ 119
Query: 450 FVAVEFDSYNNTRDP---TFRHIGIDVNSVMSMNLVKRNRVSGALEKAFIIY 596
FVAVEFDSY+N DP H+GIDVNS+MS+ V NRVSG+LEKA IIY
Sbjct: 120 FVAVEFDSYHNIWDPKSLRSSHVGIDVNSIMSLKAVNWNRVSGSLEKATIIY 171
>dbj|BAA36416.1| lectin-related polypeptide [Robinia pseudoacacia]
Length = 279
Score = 183 bits (465), Expect(2) = 3e-46
Identities = 97/169 (57%), Positives = 118/169 (69%)
Frame = +3
Query: 90 KVNSVEGVSFNFTKFTDDGSLILQGDAKIWTDGRLALPSDPLIGKTTSRVLYATPVPIWD 269
KVNS EG+SF+FTKFT + LQG A+I ++G LAL + R LY P+PIWD
Sbjct: 33 KVNSAEGISFDFTKFTQS-DITLQGSAQILSNGILALTKHVNPSWSEGRALYTEPIPIWD 91
Query: 270 STTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEENGYNQ 449
++TG+VASFV+SFSFVV D+PG +DG+VFFLAP T IP NS G LGI+D N +NQ
Sbjct: 92 ASTGNVASFVTSFSFVVQDIPGRNPADGIVFFLAPPDTEIPNNSSGGKLGIVDGNNAFNQ 151
Query: 450 FVAVEFDSYNNTRDPTFRHIGIDVNSVMSMNLVKRNRVSGALEKAFIIY 596
FV VEFDSY N D HIGIDVNS++S+ VK NRVSG+L IIY
Sbjct: 152 FVGVEFDSYINDWDADSAHIGIDVNSLISLKTVKWNRVSGSLVNVGIIY 200
Score = 23.5 bits (49), Expect(2) = 3e-46
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 17 MATLYSNPSTLKVVLASLLLLLT 85
MAT YSNPST K L + ++
Sbjct: 1 MATPYSNPSTQKPYSVPLAIFIS 23
>gb|AAA80183.1| lectin
Length = 260
Score = 167 bits (422), Expect = 1e-40
Identities = 92/170 (54%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Frame = +3
Query: 90 KVNSVEGVSFNFTKFT-DDGSLILQGDAKIWTDGRLALPSDPLIGKTTSRVLYATPVPIW 266
K NS EG+SFNFT FT D + L G A I +G LAL + T R LY+ PVPIW
Sbjct: 14 KENSDEGISFNFTNFTRGDQGVTLLGQANIMANGILALTNHTNPTWNTGRALYSKPVPIW 73
Query: 267 DSTTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEENGYN 446
DS TG+VASFV+SFSFVV ++ G +DG+VFFLAP IP NS G LGI++ YN
Sbjct: 74 DSATGNVASFVTSFSFVVQEIKGAIPADGIVFFLAP-EARIPDNSAGGQLGIVNANKAYN 132
Query: 447 QFVAVEFDSYNNTRDPTFRHIGIDVNSVMSMNLVKRNRVSGALEKAFIIY 596
FV VEFD+Y+N DP HIGID +S++S+ VK N+VSG+L K IIY
Sbjct: 133 PFVGVEFDTYSNNWDPKSAHIGIDASSLISLRTVKWNKVSGSLVKVSIIY 182
>sp|Q41160|LCB3_ROBPS PUTATIVE BARK AGGLUTININ LECRPA3 PRECURSOR
Length = 272
Score = 167 bits (422), Expect = 1e-40
Identities = 92/170 (54%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Frame = +3
Query: 90 KVNSVEGVSFNFTKFT-DDGSLILQGDAKIWTDGRLALPSDPLIGKTTSRVLYATPVPIW 266
K NS EG+SFNFT FT D + L G A I +G LAL + T R LY+ PVPIW
Sbjct: 26 KENSDEGISFNFTNFTRGDQGVTLLGQANIMANGILALTNHTNPTWNTGRALYSKPVPIW 85
Query: 267 DSTTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEENGYN 446
DS TG+VASFV+SFSFVV ++ G +DG+VFFLAP IP NS G LGI++ YN
Sbjct: 86 DSATGNVASFVTSFSFVVQEIKGAIPADGIVFFLAP-EARIPDNSAGGQLGIVNANKAYN 144
Query: 447 QFVAVEFDSYNNTRDPTFRHIGIDVNSVMSMNLVKRNRVSGALEKAFIIY 596
FV VEFD+Y+N DP HIGID +S++S+ VK N+VSG+L K IIY
Sbjct: 145 PFVGVEFDTYSNNWDPKSAHIGIDASSLISLRTVKWNKVSGSLVKVSIIY 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,277,608
Number of Sequences: 1393205
Number of extensions: 12188151
Number of successful extensions: 34120
Number of sequences better than 10.0: 387
Number of HSP's better than 10.0 without gapping: 32470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33611
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
