Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003810A_C01 KMC003810A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565018.1| expressed protein; protein id: At1g71500.1, sup... 115 1e-25
ref|NP_484558.1| CAB/ELIP/HLIP superfamily [Nostoc sp. PCC 7120]... 44 6e-04
gb|ZP_00109383.1| hypothetical protein [Nostoc punctiforme] 40 0.007
gb|ZP_00106513.1| hypothetical protein [Nostoc punctiforme] 40 0.007
ref|NP_489302.1| CAB/ELIP/HLIP superfamily of protein [Nostoc sp... 40 0.009
>ref|NP_565018.1| expressed protein; protein id: At1g71500.1, supported by cDNA:
33022., supported by cDNA: gi_20260263 [Arabidopsis
thaliana] gi|12323736|gb|AAG51832.1|AC016163_21 unknown
protein; 39989-38742 [Arabidopsis thaliana]
gi|20260264|gb|AAM13030.1| unknown protein [Arabidopsis
thaliana] gi|21592833|gb|AAM64783.1| unknown
[Arabidopsis thaliana] gi|22136512|gb|AAM91334.1|
unknown protein [Arabidopsis thaliana]
gi|26453214|dbj|BAC43681.1| unknown protein [Arabidopsis
thaliana]
Length = 287
Score = 115 bits (288), Expect = 1e-25
Identities = 56/67 (83%), Positives = 62/67 (91%)
Frame = -2
Query: 414 SDVNVDEVRMVVDEDSVGFGFTVKNEIINGKAAAIGFLLLLDFELLTGKGLLKGTGFLDF 235
++VNVDEVRM+VDE S GFGFT KNE+INGKAA IGFLLLLDFELLTGKGLLKGTGFLDF
Sbjct: 219 TNVNVDEVRMIVDEGSEGFGFTKKNEVINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDF 278
Query: 234 IYSVSNA 214
+YS S+A
Sbjct: 279 LYSASDA 285
>ref|NP_484558.1| CAB/ELIP/HLIP superfamily [Nostoc sp. PCC 7120]
gi|25318656|pir||AI1870 CAB/ELIP/HLIP superfamily
[imported] - Nostoc sp. (strain PCC 7120)
gi|17129859|dbj|BAB72472.1| CAB/ELIP/HLIP superfamily
[Nostoc sp. PCC 7120]
Length = 72
Score = 43.5 bits (101), Expect = 6e-04
Identities = 21/45 (46%), Positives = 29/45 (63%)
Frame = -2
Query: 396 EVRMVVDEDSVGFGFTVKNEIINGKAAAIGFLLLLDFELLTGKGL 262
E ++ VDE GFT EI+NG+ A IGF+ L+ E+ TGKG+
Sbjct: 20 EPKVYVDEQGDRTGFTPYAEILNGRLAMIGFISLIALEVFTGKGI 64
>gb|ZP_00109383.1| hypothetical protein [Nostoc punctiforme]
Length = 59
Score = 40.0 bits (92), Expect = 0.007
Identities = 21/46 (45%), Positives = 29/46 (62%)
Frame = -2
Query: 378 DEDSVGFGFTVKNEIINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 241
D ++V FGFT ++E NG+ A IGFL + E +G+GLL G L
Sbjct: 14 DPNAVRFGFTPQSENWNGRLAMIGFLSAILIEAFSGQGLLHFWGIL 59
>gb|ZP_00106513.1| hypothetical protein [Nostoc punctiforme]
Length = 71
Score = 40.0 bits (92), Expect = 0.007
Identities = 18/46 (39%), Positives = 29/46 (62%)
Frame = -2
Query: 396 EVRMVVDEDSVGFGFTVKNEIINGKAAAIGFLLLLDFELLTGKGLL 259
E ++ +DE GFT E++NG+ A IGF+ L+ E+ TG G++
Sbjct: 20 EPKVYIDEQGDRTGFTPYAEMLNGRLAMIGFISLIALEVFTGHGIV 65
>ref|NP_489302.1| CAB/ELIP/HLIP superfamily of protein [Nostoc sp. PCC 7120]
gi|25318650|pir||AF2463 CAB/ELIP/HLIP superfamily of
protein [imported] - Nostoc sp. (strain PCC 7120)
gi|551683|gb|AAA22044.1| ORF2
gi|17134401|dbj|BAB76961.1| CAB/ELIP/HLIP superfamily of
protein [Nostoc sp. PCC 7120]
Length = 59
Score = 39.7 bits (91), Expect = 0.009
Identities = 23/58 (39%), Positives = 31/58 (52%)
Frame = -2
Query: 414 SDVNVDEVRMVVDEDSVGFGFTVKNEIINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 241
+D +V D +S +GFT + EI NG+ A IGFL EL +G+G L G L
Sbjct: 2 TDTTKISASVVEDRNSWRWGFTPQAEIWNGRLAMIGFLAATLIELFSGQGFLHFWGIL 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,299,340
Number of Sequences: 1393205
Number of extensions: 6423464
Number of successful extensions: 15509
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 14872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15466
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
